ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	CSLC04	Cellulose-synthase-like C4
ath-r.7	CSLC04	Cellulose-synthase-like C4
ath-m.9	CSLC04	Cellulose-synthase-like C4
ath-e.2	CSLC04	Cellulose-synthase-like C4
ath-m.4.bio	CSLC04	Cellulose-synthase-like C4
ath-m.4.hor	CSLC04	Cellulose-synthase-like C4
ath-m.4.lig	CSLC04	Cellulose-synthase-like C4
ath-m.4.str	CSLC04	Cellulose-synthase-like C4
ath-m.4.tis	CSLC04	Cellulose-synthase-like C4
ath-u.5	ATCSLC08	Glycosyl transferase family 2 protein
ath-u.5	CSLC6	Cellulose-synthase-like C6
ath-u.5	CSLC12	Cellulose-synthase-like C12
bra-r.6	103842239	probable xyloglucan glycosyltransferase 8
bra-r.6	103859212	probable xyloglucan glycosyltransferase 6
bra-r.6	103837011	xyloglucan glycosyltransferase 4
bna-r.1	111207839	xyloglucan glycosyltransferase 4
bna-r.1	111208179	probable xyloglucan glycosyltransferase 5
bna-r.1	106420501	probable xyloglucan glycosyltransferase 5
ghi-r.1	107937927	probable xyloglucan glycosyltransferase 5
ghi-r.1	107933966	probable xyloglucan glycosyltransferase 6
ghi-r.1	107930604	probable xyloglucan glycosyltransferase 12
cit-r.1	102612123	xyloglucan glycosyltransferase 4
cit-r.1	102611557	probable xyloglucan glycosyltransferase 12
gma-u.5	100820496	probable xyloglucan glycosyltransferase 6
gma-u.5	100818571	xyloglucan glycosyltransferase 4
gma-u.5	100818436	probable xyloglucan glycosyltransferase 12
vvi-u.5	100242055	probable xyloglucan glycosyltransferase 12
vvi-u.5	100244115	xyloglucan glycosyltransferase 4
vvi-u.5	100250441	probable xyloglucan glycosyltransferase 6
ppo-u.5	7489177	probable xyloglucan glycosyltransferase 5
ppo-u.5	7459503	probable xyloglucan glycosyltransferase 6
ppo-u.5	7489772	probable xyloglucan glycosyltransferase 12
mtr-u.5	25489999	probable xyloglucan glycosyltransferase 12
mtr-u.5	11424320	probable xyloglucan glycosyltransferase 6
mtr-u.5	25495224	xyloglucan glycosyltransferase 4
sly-u.5	101267858	cellulose-synthase-like
sly-u.5	101251178	probable xyloglucan glycosyltransferase 12
sly-u.5	101254463	probable xyloglucan glycosyltransferase 12
sot-r.1	102580102	probable xyloglucan glycosyltransferase 12
sot-r.1	102578680	probable xyloglucan glycosyltransferase 5
sot-r.1	102588069	xyloglucan glycosyltransferase 4
nta-r.1	107827477	putative xyloglucan glycosyltransferase 12
nta-r.1	107809757	putative xyloglucan glycosyltransferase 6
nta-r.1	107812855	xyloglucan glycosyltransferase 4-like
osa-u.5	4325496	probable xyloglucan glycosyltransferase 1
osa-u.5	4334258	probable xyloglucan glycosyltransferase 9
osa-u.5	4339283	probable xyloglucan glycosyltransferase 7
zma-u.5	103644075	probable xyloglucan glycosyltransferase 9
zma-u.5	103636615	probable xyloglucan glycosyltransferase 1
zma-u.5	103630593	probable xyloglucan glycosyltransferase 7
tae-r.2	123062167	probable xyloglucan glycosyltransferase 1
tae-r.2	123139847	probable xyloglucan glycosyltransferase 7
tae-r.2	123070896	probable xyloglucan glycosyltransferase 1
hvu-r.1	123447323	probable xyloglucan glycosyltransferase 7
hvu-r.1	123452420	probable xyloglucan glycosyltransferase 9
sbi-r.1	8060282	probable xyloglucan glycosyltransferase 2
sbi-r.1	8067927	probable xyloglucan glycosyltransferase 3
bdi-r.1	100846843	putative xyloglucan glycosyltransferase 10
bdi-r.1	100838993	probable xyloglucan glycosyltransferase 7
bdi-r.1	100830646	probable xyloglucan glycosyltransferase 3

Top 50 coexpressed genes to CSLC04 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CSLC04 (ath-u.5 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

Cellulose-synthase-like C4

KEGG

GO BP

GO:0048868 [list] [network] pollen tube development	(225 genes)	IMP
GO:0071555 [list] [network] cell wall organization	(274 genes)	IMP
GO:0099402 [list] [network] plant organ development	(1167 genes)	IMP

GO CC

GO:0000138 [list] [network] Golgi trans cisterna	(87 genes)	HDA
GO:0005802 [list] [network] trans-Golgi network	(279 genes)	HDA
GO:0005768 [list] [network] endosome	(359 genes)	HDA
GO:0005794 [list] [network] Golgi apparatus	(1198 genes)	HDA ISM

GO MF

GO:0016759 [list] [network] cellulose synthase activity	(38 genes)	ISS
GO:0042803 [list] [network] protein homodimerization activity	(237 genes)	IPI
GO:0016757 [list] [network] glycosyltransferase activity	(554 genes)	IMP ISS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_566835.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 7, nucl 1, vacu 1, E.R. 1, golg 1, E.R._vacu 1

(predict for NP_566835.1)

Subcellular
localization
TargetP

other 8, chlo 4

(predict for NP_566835.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for CSLC04	ath-r.7 for CSLC04	ath-m.9 for CSLC04	ath-e.2 for CSLC04	ath-m.4.bio for CSLC04	ath-m.4.hor for CSLC04	ath-m.4.lig for CSLC04	ath-m.4.str for CSLC04	ath-m.4.tis for CSLC04	ath-u.5 for ATCSLC08	ath-u.5 for CSLC6	ath-u.5 for CSLC12	bra-r.6 for 103842239	bra-r.6 for 103859212	bra-r.6 for 103837011	bna-r.1 for 111207839	bna-r.1 for 111208179	bna-r.1 for 106420501	ghi-r.1 for 107937927	ghi-r.1 for 107933966	ghi-r.1 for 107930604	cit-r.1 for 102612123	cit-r.1 for 102611557	gma-u.5 for 100820496	gma-u.5 for 100818571	gma-u.5 for 100818436	vvi-u.5 for 100242055	vvi-u.5 for 100244115	vvi-u.5 for 100250441	ppo-u.5 for 7489177	ppo-u.5 for 7459503	ppo-u.5 for 7489772	mtr-u.5 for 25489999	mtr-u.5 for 11424320	mtr-u.5 for 25495224	sly-u.5 for 101267858	sly-u.5 for 101251178	sly-u.5 for 101254463	sot-r.1 for 102580102	sot-r.1 for 102578680	sot-r.1 for 102588069	nta-r.1 for 107827477	nta-r.1 for 107809757	nta-r.1 for 107812855	osa-u.5 for 4325496	osa-u.5 for 4334258	osa-u.5 for 4339283	zma-u.5 for 103644075	zma-u.5 for 103636615	zma-u.5 for 103630593	tae-r.2 for 123062167	tae-r.2 for 123139847	tae-r.2 for 123070896	hvu-r.1 for 123447323	hvu-r.1 for 123452420	sbi-r.1 for 8060282	sbi-r.1 for 8067927	bdi-r.1 for 100846843	bdi-r.1 for 100838993	bdi-r.1 for 100830646

Please wait a moment.

Ortholog

Ortholog ID: 476

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

CSLC04

CSLC5

Function^*

Cellulose-synthase-like C4

Glycosyl transferase family 2 protein

Cellulose-synthase-like C5

probable xyloglucan glycosyltransferase 6

xyloglucan glycosyltransferase 4