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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   HMG   high mobility group 
 ath-r.7   HMG   high mobility group 
 ath-m.9   HMG   high mobility group 
 ath-e.2   HMG   high mobility group 
 ath-m.4.bio   HMG   high mobility group 
 ath-m.4.hor   HMG   high mobility group 
 ath-m.4.lig   HMG   high mobility group 
 ath-m.4.str   HMG   high mobility group 
 ath-m.4.tis   HMG   high mobility group 
 bra-r.6   103854188   FACT complex subunit SSRP1 
 bra-r.6   103875134   FACT complex subunit SSRP1 
 bna-r.1   111209879   FACT complex subunit SSRP1-like 
 bna-r.1   125606444   FACT complex subunit SSRP1 
 bna-r.1   106349159   FACT complex subunit SSRP1-like 
 ghi-r.1   107911801   FACT complex subunit SSRP1 
 ghi-r.1   107892362   FACT complex subunit SSRP1 
 ghi-r.1   107892338   FACT complex subunit SSRP1 
 cit-r.1   102622679   FACT complex subunit SSRP1 
 gma-u.5   100805034   FACT complex subunit SSRP1 
 gma-u.5   100780190   FACT complex subunit SSRP1 
 vvi-u.5   100249277   FACT complex subunit SSRP1 
 ppo-u.5   7482452   FACT complex subunit SSRP1 
 ppo-u.5   7472609   FACT complex subunit SSRP1 
 mtr-u.5   25482152   FACT complex subunit SSRP1 
 mtr-u.5   11421264   FACT complex subunit SSRP1 
 sly-u.5   101259798   FACT complex subunit SSRP1 
 sot-r.1   102593838   FACT complex subunit SSRP1-like 
 sot-r.1   102594303   FACT complex subunit SSRP1-like 
 nta-r.1   107808145   FACT complex subunit SSRP1 
 nta-r.1   107761723   FACT complex subunit SSRP1 
 osa-u.5   4325652   FACT complex subunit SSRP1-A-like 
 osa-u.5   4337994   FACT complex subunit SSRP1-B-like 
 zma-u.5   542007   SSRP1 protein 
 zma-u.5   103630072   FACT complex subunit SSRP1-B 
 tae-r.2   123077475   FACT complex subunit SSRP1-A 
 tae-r.2   123040911   FACT complex subunit SSRP1-B 
 tae-r.2   123060408   FACT complex subunit SSRP1-A 
 hvu-r.1   123427125   FACT complex subunit SSRP1-B-like 
 sbi-r.1   8080975   FACT complex subunit SSRP1-B 
 sbi-r.1   8084374   FACT complex subunit SSRP1 
 bdi-r.1   100836453   FACT complex subunit SSRP1-B 
 bdi-r.1   100822727   FACT complex subunit SSRP1-A 
 cre-r.1   CHLRE_01g029450v5   uncharacterized protein 

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Top 50 coexpressed genes to HMG (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HMG (ath-u.5 coexpression data)

CoexMap"822505"


athHMG | Entrez gene ID : 822505      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 2 1 2 2 1 2 2 2 2 3 1 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000741 [list] [network] karyogamy  (31 genes)  IMP  
GO:0010197 [list] [network] polar nucleus fusion  (31 genes)  IMP  
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (186 genes)  IMP  
GO CC
GO:0035101 [list] [network] FACT complex  (2 genes)  IDA  
GO:0000791 [list] [network] euchromatin  (13 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_189515.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_189515.1)
Subcellular
localization
TargetP
other 7  (predict for NP_189515.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
HMG
ath-r.7
for
HMG
ath-m.9
for
HMG
ath-e.2
for
HMG
ath-m.4.bio
for
HMG
ath-m.4.hor
for
HMG
ath-m.4.lig
for
HMG
ath-m.4.str
for
HMG
ath-m.4.tis
for
HMG
bra-r.6
for
103854188
bra-r.6
for
103875134
bna-r.1
for
111209879
bna-r.1
for
125606444
bna-r.1
for
106349159
ghi-r.1
for
107911801
ghi-r.1
for
107892362
ghi-r.1
for
107892338
cit-r.1
for
102622679
gma-u.5
for
100805034
gma-u.5
for
100780190
vvi-u.5
for
100249277
ppo-u.5
for
7482452
ppo-u.5
for
7472609
mtr-u.5
for
25482152
mtr-u.5
for
11421264
sly-u.5
for
101259798
sot-r.1
for
102593838
sot-r.1
for
102594303
nta-r.1
for
107808145
nta-r.1
for
107761723
osa-u.5
for
4325652
osa-u.5
for
4337994
zma-u.5
for
542007
zma-u.5
for
103630072
tae-r.2
for
123077475
tae-r.2
for
123040911
tae-r.2
for
123060408
hvu-r.1
for
123427125
sbi-r.1
for
8080975
sbi-r.1
for
8084374
bdi-r.1
for
100836453
bdi-r.1
for
100822727
cre-r.1
for
CHLRE_01g029450v5


Ortholog ID: 4395
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot sot nta nta osa osa zma zma tae tae tae hvu sbi sbi bdi bdi cre
Symbol HMG LOC103854188 LOC103875134 LOC125606444 LOC106371129 LOC106421606 LOC107911801 LOC107892338 LOC107924261 LOC102622679 LOC100805034 LOC100780190 LOC100249277 LOC7482452 LOC7472609 LOC25482152 LOC11421264 LOC101259798 LOC102593838 LOC102594303 LOC107808145 LOC107761723 LOC4325652 LOC4337994 LOC542007 LOC103630072 LOC123077475 LOC123068950 LOC123115141 LOC123427125 LOC8080975 LOC8084374 LOC100836453 LOC100822727 CHLRE_01g029450v5
Function* high mobility group FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1-like FACT complex subunit SSRP1-like FACT complex subunit SSRP1 FACT complex subunit SSRP1 FACT complex subunit SSRP1-A-like FACT complex subunit SSRP1-B-like SSRP1 protein FACT complex subunit SSRP1-B FACT complex subunit SSRP1-A FACT complex subunit SSRP1-A FACT complex subunit SSRP1-B FACT complex subunit SSRP1-B-like FACT complex subunit SSRP1-B FACT complex subunit SSRP1 FACT complex subunit SSRP1-B FACT complex subunit SSRP1-A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03420 Nucleotide excision repair 3
ath04120 Ubiquitin mediated proteolysis 2
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 4
ghi03030 DNA replication 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit03050 Proteasome 2
cit03013 Nucleocytoplasmic transport 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma03040 Spliceosome 4
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 2
osa00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00620 Pyruvate metabolism 3
tae00710 Carbon fixation by Calvin cycle 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 2
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
hvu03083 Polycomb repressive complex 2
hvu03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 2
sbi00280 Valine, leucine and isoleucine degradation 2
sbi00410 beta-Alanine metabolism 2
sbi00640 Propanoate metabolism 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 6
cre03013 Nucleocytoplasmic transport 2
cre03040 Spliceosome 2
cre03082 ATP-dependent chromatin remodeling 2
cre03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822505 103854188 103875134 125606444 106371129 106421606 107911801 107892338 107924261 102622679 100805034 100780190 100249277 7482452 7472609 25482152 11421264 101259798 102593838 102594303 107808145 107761723 4325652 4337994 542007 103630072 123077475 123068950 123115141 123427125 8080975 8084374 100836453 100822727 5715346
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