ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT3G52240	transcriptional regulator ATRX
ath-r.7	AT3G52240	transcriptional regulator ATRX
ath-m.9	AT3G52240	transcriptional regulator ATRX
ath-e.2	AT3G52240	transcriptional regulator ATRX
ath-m.4.bio	AT3G52240	transcriptional regulator ATRX
ath-m.4.hor	AT3G52240	transcriptional regulator ATRX
ath-m.4.lig	AT3G52240	transcriptional regulator ATRX
ath-m.4.str	AT3G52240	transcriptional regulator ATRX
ath-m.4.tis	AT3G52240	transcriptional regulator ATRX
bra-r.6	103863532	uncharacterized LOC103863532
bra-r.6	103841162	uncharacterized LOC103841162
bna-r.1	106445679	uncharacterized LOC106445679
bna-r.1	106402508	uncharacterized LOC106402508
bna-r.1	106390708	uncharacterized LOC106390708
ghi-r.1	107943103	uncharacterized LOC107943103
ghi-r.1	107927588	uncharacterized LOC107927588
cit-r.1	102610545	uncharacterized LOC102610545
gma-u.5	102659886	micronuclear linker histone polyprotein
gma-u.5	102665686	uncharacterized LOC102665686
vvi-u.5	104881178	uncharacterized LOC104881178
vvi-u.5	104879703	uncharacterized LOC104879703
ppo-u.5	7479827	uncharacterized LOC7479827
mtr-u.5	25485820	uncharacterized LOC25485820
sly-u.5	101267607	uncharacterized LOC101267607
sly-u.5	101251943	probable GPI-anchored adhesin-like protein PGA55
sot-r.1	102602892	uncharacterized LOC102602892
sot-r.1	102578411	uncharacterized LOC102578411
nta-r.1	107817128	uncharacterized LOC107817128
nta-r.1	107798042	uncharacterized LOC107798042
nta-r.1	107788181	uncharacterized LOC107788181
osa-u.5	4324759	uncharacterized LOC4324759
osa-u.5	107277445	uncharacterized LOC107277445
osa-u.5	4338943	uncharacterized LOC4338943
zma-u.5	100278681	uncharacterized LOC100278681
zma-u.5	103630408	uncharacterized LOC103630408
tae-r.2	123182190	uncharacterized LOC123182190
tae-r.2	123135128	uncharacterized LOC123135128
tae-r.2	123071477	uncharacterized LOC123071477
hvu-r.1	123444850	uncharacterized LOC123444850
hvu-r.1	123446077	uncharacterized LOC123446077
sbi-r.1	8060122	uncharacterized LOC8060122
sbi-r.1	8072509	uncharacterized LOC8072509
bdi-r.1	100830507	uncharacterized LOC100830507
bdi-r.1	100844665	uncharacterized LOC100844665

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_190792.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for NP_190792.2)

Subcellular
localization
TargetP

other 8

(predict for NP_190792.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT3G52240	ath-r.7 for AT3G52240	ath-m.9 for AT3G52240	ath-e.2 for AT3G52240	ath-m.4.bio for AT3G52240	ath-m.4.hor for AT3G52240	ath-m.4.lig for AT3G52240	ath-m.4.str for AT3G52240	ath-m.4.tis for AT3G52240	bra-r.6 for 103863532	bra-r.6 for 103841162	bna-r.1 for 106445679	bna-r.1 for 106402508	bna-r.1 for 106390708	ghi-r.1 for 107943103	ghi-r.1 for 107927588	cit-r.1 for 102610545	gma-u.5 for 102659886	gma-u.5 for 102665686	vvi-u.5 for 104881178	vvi-u.5 for 104879703	ppo-u.5 for 7479827	mtr-u.5 for 25485820	sly-u.5 for 101267607	sly-u.5 for 101251943	sot-r.1 for 102602892	sot-r.1 for 102578411	nta-r.1 for 107817128	nta-r.1 for 107798042	nta-r.1 for 107788181	osa-u.5 for 4324759	osa-u.5 for 107277445	osa-u.5 for 4338943	zma-u.5 for 100278681	zma-u.5 for 103630408	tae-r.2 for 123182190	tae-r.2 for 123135128	tae-r.2 for 123071477	hvu-r.1 for 123444850	hvu-r.1 for 123446077	sbi-r.1 for 8060122	sbi-r.1 for 8072509	bdi-r.1 for 100830507	bdi-r.1 for 100844665

Ortholog

Ortholog ID: 4577

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

transcriptional regulator ATRX

uncharacterized LOC103863532

uncharacterized LOC103841162

uncharacterized LOC106445679

uncharacterized LOC106390708

uncharacterized BNAC08G23550D

uncharacterized LOC107943103

uncharacterized LOC107927588

uncharacterized LOC102610545

micronuclear linker histone polyprotein

uncharacterized LOC102665686

uncharacterized LOC104881178

uncharacterized LOC104879703

uncharacterized LOC7479827

uncharacterized LOC25485820

uncharacterized LOC101267607

probable GPI-anchored adhesin-like protein PGA55

uncharacterized LOC102602892

uncharacterized LOC102578411

uncharacterized LOC107817128

uncharacterized LOC107798042

uncharacterized LOC107788181

uncharacterized LOC4324759

uncharacterized LOC107277445

uncharacterized LOC4338939

uncharacterized LOC100278681

uncharacterized LOC103630408

uncharacterized LOC123182190

uncharacterized LOC123135128

uncharacterized LOC123062656

uncharacterized LOC123444850

uncharacterized LOC123446077

uncharacterized LOC8060122

uncharacterized LOC8072509

uncharacterized LOC100830507

uncharacterized LOC100844665

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03460	Fanconi anemia pathway	3
bna04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00760	Nicotinate and nicotinamide metabolism	2
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00760	Nicotinate and nicotinamide metabolism	2
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	3
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00562	Inositol phosphate metabolism	3
tae04070	Phosphatidylinositol signaling system	3
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00562	Inositol phosphate metabolism	3
tae04070	Phosphatidylinositol signaling system	3
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00460	Cyanoamino acid metabolism	3
tae00500	Starch and sucrose metabolism	3
tae00999	Biosynthesis of various plant secondary metabolites	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01040	Biosynthesis of unsaturated fatty acids	2
bdi01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03030	DNA replication	2
bdi03410	Base excision repair	2
bdi03420	Nucleotide excision repair	2

Expression

Expression pattern

Entrez Gene ID^*

824389

103863532

103841162

106445679

106390708

106367836

107943103

107927588

102610545

102659886

102665686

104881178

104879703

7479827

25485820

101267607

101251943

102602892

102578411

107817128

107798042

107788181

4324759

107277445

4338939

100278681

103630408

123182190

123135128

123062656

123444850

123446077

8060122

8072509

100830507

100844665

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT3G52240 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G52240 (ath-u.5 coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	2	3	2	1	2	2	1	1	2	2	3	3	2	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G52240 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G52240 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**