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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SIGC   RNApolymerase sigma-subunit C 
 ath-r.7   SIGC   RNApolymerase sigma-subunit C 
 ath-m.9   SIGC   RNApolymerase sigma-subunit C 
 ath-e.2   SIGC   RNApolymerase sigma-subunit C 
 ath-m.4.bio   SIGC   RNApolymerase sigma-subunit C 
 ath-m.4.hor   SIGC   RNApolymerase sigma-subunit C 
 ath-m.4.lig   SIGC   RNApolymerase sigma-subunit C 
 ath-m.4.str   SIGC   RNApolymerase sigma-subunit C 
 ath-m.4.tis   SIGC   RNApolymerase sigma-subunit C 
 gma-u.5   100802522   RNA polymerase sigma factor sigC 
 vvi-u.5   100252651   RNA polymerase sigma factor sigC 
 ppo-u.5   7462282   RNA polymerase sigma factor sigC 
 mtr-u.5   11429595   RNA polymerase sigma factor sigC 
 sly-u.5   101268893   RNA polymerase sigma factor sigC 
 osa-u.5   4339778   RNA polymerase sigma factor sigC 
 zma-u.5   542081   sigma factor protein 

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Top 50 coexpressed genes to SIGC (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SIGC (ath-u.5 coexpression data)

CoexMap"824559"


athSIGC | Entrez gene ID : 824559      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 9 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0019685 [list] [network] photosynthesis, dark reaction  (7 genes)  NAS  
GO:0006352 [list] [network] DNA-templated transcription initiation  (35 genes)  IDA TAS  
GO:0071482 [list] [network] cellular response to light stimulus  (105 genes)  IEP  
GO:2001141 [list] [network] regulation of RNA biosynthetic process  (1621 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO MF
GO:0016987 [list] [network] sigma factor activity  (6 genes)  IMP ISS  
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (9 genes)  IMP ISS  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
Protein NP_001326036.1 [sequence] [blastp]
NP_190960.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_001326036.1)
chlo 9,  nucl 1,  pero 1  (predict for NP_190960.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001326036.1)
chlo 9  (predict for NP_190960.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SIGC

.
ath-r.7
for
SIGC

.
ath-m.9
for
SIGC

.
ath-e.2
for
SIGC

.
ath-m.4.bio
for
SIGC

.
ath-m.4.hor
for
SIGC

.
ath-m.4.lig
for
SIGC

.
ath-m.4.str
for
SIGC

.
ath-m.4.tis
for
SIGC

.
gma-u.5
for
100802522

.
vvi-u.5
for
100252651

.
ppo-u.5
for
7462282

.
mtr-u.5
for
11429595

.
sly-u.5
for
101268893

.
osa-u.5
for
4339778

.
zma-u.5
for
542081

.


Ortholog ID: 10821
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi bdi nta nta
Symbol SIGC LOC100802522 LOC101268893 LOC4339778 LOC542081 LOC103863276 LOC100252651 LOC7462282 LOC11429595 LOC123070406 LOC123149263 LOC123452471 LOC107901502 LOC107897079 LOC106380601 LOC106445536 LOC8066548 LOC102599083 LOC102616677 LOC100823148 LOC104582577 LOC107808013 LOC107803694
Function* RNApolymerase sigma-subunit C RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC sigma factor protein RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC-like RNA polymerase sigma factor SigA1 RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC-like RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC-like RNA polymerase sigma factor sigC
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
osa00730 Thiamine metabolism 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00730 Thiamine metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00730 Thiamine metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00230 Purine metabolism 2
nta00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00230 Purine metabolism 2
nta00051 Fructose and mannose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824559 100802522 101268893 4339778 542081 103863276 100252651 7462282 11429595 123070406 123149263 123452471 107901502 107897079 106380601 106445536 8066548 102599083 102616677 100823148 104582577 107808013 107803694
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