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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G54460   SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein 
 ath-r.7   AT3G54460   SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein 
 ath-e.2   AT3G54460   SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein 
 gma-u.5   100803102   F-box protein At3g54460 
 gma-u.5   100779718   F-box protein At3g54460 
 vvi-u.5   100254946   F-box protein At3g54460 
 ppo-u.5   7462787   F-box protein At3g54460 
 mtr-u.5   11424184   F-box protein At3g54460 
 sly-u.5   101260496   F-box protein At3g54460 
 osa-u.5   4325745   F-box protein At3g54460 
 zma-u.5   103652266   F-box protein At3g54460 

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Top 50 coexpressed genes to AT3G54460 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G54460 (ath-u.5 coexpression data)

CoexMap"824611"


athAT3G54460 | Entrez gene ID : 824611      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001326105.1 [sequence] [blastp]
NP_680129.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 1,  mito 1,  plas 1,  cysk 1,  cyto_pero 1,  cysk_plas 1,  mito_plas 1,  cyto_E.R. 1  (predict for NP_001326105.1)
nucl 7,  plas 1,  mito 1,  cysk 1,  golg_plas 1,  E.R._plas 1,  cyto_plas 1  (predict for NP_680129.1)
Subcellular
localization
TargetP
scret 6  (predict for NP_001326105.1)
scret 6,  other 3  (predict for NP_680129.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G54460

.
ath-r.7
for
AT3G54460

.
ath-e.2
for
AT3G54460

.
gma-u.5
for
100803102

.
gma-u.5
for
100779718

.
vvi-u.5
for
100254946

.
ppo-u.5
for
7462787

.
mtr-u.5
for
11424184

.
sly-u.5
for
101260496

.
osa-u.5
for
4325745

.
zma-u.5
for
103652266

.


Ortholog ID: 10150
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT3G54460 LOC100803102 LOC100779718 LOC101260496 LOC4325745 LOC103652266 LOC103863232 LOC100254946 LOC7462787 LOC11424184 LOC123080722 LOC123072507 LOC123442181 LOC107939258 LOC107936201 LOC106431379 LOC106445465 LOC8077364 LOC102602511 LOC102627815 LOC100844565 LOC107801368 LOC107777458
Function* SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460 F-box protein At3g54460
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 5
ath00900 Terpenoid backbone biosynthesis 2
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 3
gma03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 2
zma03250 Viral life cycle - HIV-1 2
zma00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 4
bra03250 Viral life cycle - HIV-1 4
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 2
ppo00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 5
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00561 Glycerolipid metabolism 2
bdi00564 Glycerophospholipid metabolism 2
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
nta04120 Ubiquitin mediated proteolysis 2
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824611 100803102 100779718 101260496 4325745 103652266 103863232 100254946 7462787 11424184 123080722 123072507 123442181 107939258 107936201 106431379 106445465 8077364 102602511 102627815 100844565 107801368 107777458
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