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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G54500   agglutinin-like protein 
 ath-r.7   AT3G54500   agglutinin-like protein 
 ath-m.9   AT3G54500   agglutinin-like protein 
 ath-e.2   AT3G54500   agglutinin-like protein 
 ath-m.4.bio   AT3G54500   agglutinin-like protein 
 ath-m.4.hor   AT3G54500   agglutinin-like protein 
 ath-m.4.lig   AT3G54500   agglutinin-like protein 
 ath-m.4.str   AT3G54500   agglutinin-like protein 
 ath-m.4.tis   AT3G54500   agglutinin-like protein 
 bra-r.6   103829982   protein LNK2 
 bra-r.6   103863228   protein LNK2 
 bna-r.1   106352867   protein LNK2-like 
 bna-r.1   106410622   protein LNK2 
 ghi-r.1   107904721   protein LNK2 
 ghi-r.1   107904424   protein LNK2 
 cit-r.1   102616093   protein LNK2 
 gma-u.5   100800977   protein LNK2 
 gma-u.5   100812174   protein LNK2 
 gma-u.5   100793985   protein LNK2 
 vvi-u.5   100248068   protein LNK2 
 ppo-u.5   18097188   protein LNK2 
 ppo-u.5   18110162   protein LNK2 
 ppo-u.5   7496003   protein LNK2 
 mtr-u.5   120579648   protein LNK2 
 sly-u.5   101268608   protein LNK2 
 sot-r.1   102601920   uncharacterized LOC102601920 
 nta-r.1   107778926   protein LNK2 
 nta-r.1   107764009   protein LNK2 
 osa-u.5   4324539   protein LNK2 
 zma-u.5   100275614   protein LNK2 
 zma-u.5   103643041   protein LNK2 
 tae-r.2   123078356   protein LNK2 
 tae-r.2   123069845   protein LNK2 
 tae-r.2   123061210   protein LNK2 
 hvu-r.1   123443599   protein LNK2-like 
 sbi-r.1   8074905   protein LNK2 
 bdi-r.1   100826655   protein LNK2 

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Top 50 coexpressed genes to AT3G54500 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G54500 (ath-u.5 coexpression data)

CoexMap"824615"


athAT3G54500 | Entrez gene ID : 824615      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 2 2 1 3 1 3 1 1 1 2 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032922 [list] [network] circadian regulation of gene expression  (9 genes)  IDA  
GO:0009649 [list] [network] entrainment of circadian clock  (12 genes)  IGI  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003712 [list] [network] transcription coregulator activity  (77 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001190089.1 [sequence] [blastp]
NP_001319746.1 [sequence] [blastp]
NP_001319747.1 [sequence] [blastp]
NP_001326676.1 [sequence] [blastp]
NP_001326677.1 [sequence] [blastp]
NP_001326678.1 [sequence] [blastp]
NP_191014.2 [sequence] [blastp]
NP_974432.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  plas 1,  vacu 1,  chlo 1,  mito 1,  extr 1,  chlo_mito 1,  golg_plas 1,  E.R._vacu 1,  cysk_plas 1,  E.R._plas 1,  cyto_plas 1  (predict for NP_001190089.1)
nucl 9  (predict for NP_001319746.1)
nucl 9  (predict for NP_001319747.1)
nucl 10  (predict for NP_001326676.1)
nucl 10  (predict for NP_001326677.1)
nucl 10  (predict for NP_001326678.1)
nucl 10  (predict for NP_191014.2)
nucl 10  (predict for NP_974432.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001190089.1)
other 9  (predict for NP_001319746.1)
other 9  (predict for NP_001319747.1)
other 7,  chlo 3  (predict for NP_001326676.1)
other 9  (predict for NP_001326677.1)
other 9  (predict for NP_001326678.1)
other 9  (predict for NP_191014.2)
other 7,  chlo 3  (predict for NP_974432.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G54500
ath-r.7
for
AT3G54500
ath-m.9
for
AT3G54500
ath-e.2
for
AT3G54500
ath-m.4.bio
for
AT3G54500
ath-m.4.hor
for
AT3G54500
ath-m.4.lig
for
AT3G54500
ath-m.4.str
for
AT3G54500
ath-m.4.tis
for
AT3G54500
bra-r.6
for
103829982
bra-r.6
for
103863228
bna-r.1
for
106352867
bna-r.1
for
106410622
ghi-r.1
for
107904721
ghi-r.1
for
107904424
cit-r.1
for
102616093
gma-u.5
for
100800977
gma-u.5
for
100812174
gma-u.5
for
100793985
vvi-u.5
for
100248068
ppo-u.5
for
18097188
ppo-u.5
for
18110162
ppo-u.5
for
7496003
mtr-u.5
for
120579648
sly-u.5
for
101268608
sot-r.1
for
102601920
nta-r.1
for
107778926
nta-r.1
for
107764009
osa-u.5
for
4324539
zma-u.5
for
100275614
zma-u.5
for
103643041
tae-r.2
for
123078356
tae-r.2
for
123069845
tae-r.2
for
123061210
hvu-r.1
for
123443599
sbi-r.1
for
8074905
bdi-r.1
for
100826655


Ortholog ID: 7622
Species ath bra bra bna bna ghi ghi cit gma gma gma vvi ppo ppo ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol AT3G54500 LOC103829982 LOC103863228 LOC106352867 LOC106410622 LOC107904721 LOC107904424 LOC102616093 LOC100800977 LOC100812174 LOC100793985 LOC100248068 LOC18097188 LOC18110162 LOC7496003 LOC120579648 LOC101268608 LOC102601920 LOC107778926 LOC107764009 LOC4324539 LOC100275614 LOC103643041 LOC123078356 LOC123069845 LOC123061210 LOC123443599 LOC8074905 LOC100826655
Function* agglutinin-like protein protein LNK2 protein LNK2 protein LNK2-like protein LNK2 protein LNK2 protein LNK2 protein LNK2 protein LNK2 protein LNK2 protein LNK2 protein LNK2 protein LNK2 protein LNK2 protein LNK2 protein LNK2 protein LNK2 uncharacterized LOC102601920 protein LNK2 protein LNK2 protein LNK2 protein LNK2 protein LNK2 protein LNK2 protein LNK2 protein LNK2 protein LNK2-like protein LNK2 protein LNK2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 3
bna00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 3
bna04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 3
cit00380 Tryptophan metabolism 2
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
gma00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 2
nta04712 Circadian rhythm - plant 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 3
nta04075 Plant hormone signal transduction 2
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 3
osa00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00270 Cysteine and methionine metabolism 2
zma00330 Arginine and proline metabolism 2
zma00500 Starch and sucrose metabolism 2
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 3
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
tae04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 2
sbi00562 Inositol phosphate metabolism 2
sbi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 3
bdi00561 Glycerolipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824615 103829982 103863228 106352867 106410622 107904721 107904424 102616093 100800977 100812174 100793985 100248068 18097188 18110162 7496003 120579648 101268608 102601920 107778926 107764009 4324539 100275614 103643041 123078356 123069845 123061210 123443599 8074905 100826655
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