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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G54750   downstream neighbor of Son 
 ath-r.7   AT3G54750   downstream neighbor of Son 
 ath-m.9   AT3G54750   downstream neighbor of Son 
 ath-e.2   AT3G54750   downstream neighbor of Son 
 ath-m.4.bio   AT3G54750   downstream neighbor of Son 
 ath-m.4.hor   AT3G54750   downstream neighbor of Son 
 ath-m.4.lig   AT3G54750   downstream neighbor of Son 
 ath-m.4.str   AT3G54750   downstream neighbor of Son 
 ath-m.4.tis   AT3G54750   downstream neighbor of Son 
 bna-r.1   106412273   protein downstream neighbor of Son 
 bna-r.1   106391274   protein downstream neighbor of son homolog 
 bna-r.1   106412390   protein downstream neighbor of Son 
 ghi-r.1   107925687   protein downstream neighbor of Son 
 ghi-r.1   121229663   protein downstream neighbor of Son 
 ghi-r.1   121219566   protein downstream neighbor of son homolog 
 cit-r.1   102614742   uncharacterized LOC102614742 
 gma-u.5   100782210   uncharacterized LOC100782210 
 gma-u.5   100816076   uncharacterized LOC100816076 
 gma-u.5   100796531   protein downstream neighbor of Son 
 vvi-u.5   104877384   uncharacterized LOC104877384 
 vvi-u.5   100257121   uncharacterized LOC100257121 
 vvi-u.5   100245124   uncharacterized LOC100245124 
 ppo-u.5   7455613   uncharacterized LOC7455613 
 ppo-u.5   7488068   uncharacterized LOC7488068 
 mtr-u.5   25499530   protein downstream neighbor of Son 
 mtr-u.5   25497873   protein downstream neighbor of Son 
 sly-u.5   101266252   uncharacterized LOC101266252 
 sot-r.1   102591670   protein downstream neighbor of son homolog 
 nta-r.1   107827100   uncharacterized LOC107827100 
 nta-r.1   107832270   uncharacterized LOC107832270 
 nta-r.1   107795246   uncharacterized LOC107795246 
 osa-u.5   4352823   uncharacterized LOC4352823 
 zma-u.5   100274059   uncharacterized LOC100274059 
 tae-r.2   123079383   uncharacterized LOC123079383 
 tae-r.2   123119229   protein downstream neighbor of Son 
 hvu-r.1   123444570   uncharacterized LOC123444570 
 sbi-r.1   8071492   protein downstream neighbor of Son 
 bdi-r.1   100824058   uncharacterized LOC100824058 
 bdi-r.1   100822370   protein downstream neighbor of Son 
 cre-r.1   CHLRE_03g197600v5   uncharacterized protein 

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Top 50 coexpressed genes to AT3G54750 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G54750 (ath-u.5 coexpression data)

CoexMap"824640"


athAT3G54750 | Entrez gene ID : 824640      
Species ath bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre bra
Paralog 9 3 3 1 3 3 2 2 1 1 3 1 1 2 1 1 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001190093.1 [sequence] [blastp]
NP_001327038.1 [sequence] [blastp]
NP_001327039.1 [sequence] [blastp]
NP_191035.2 [sequence] [blastp]
NP_850703.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cysk 1,  chlo 1,  cyto 1,  mito 1,  chlo_mito 1,  golg_plas 1  (predict for NP_001190093.1)
nucl 6,  cysk 1,  chlo 1,  cyto 1,  mito 1,  chlo_mito 1,  golg_plas 1  (predict for NP_001327038.1)
nucl 6,  cysk 1,  chlo 1,  cyto 1,  mito 1,  chlo_mito 1,  golg_plas 1  (predict for NP_001327039.1)
nucl 6,  cysk 1,  chlo 1,  cyto 1,  mito 1,  chlo_mito 1,  golg_plas 1  (predict for NP_191035.2)
nucl 6,  cysk 1,  chlo 1,  cyto 1,  mito 1,  chlo_mito 1,  golg_plas 1  (predict for NP_850703.1)
Subcellular
localization
TargetP
other 8,  mito 6  (predict for NP_001190093.1)
other 8,  mito 6  (predict for NP_001327038.1)
other 8,  mito 6  (predict for NP_001327039.1)
other 8,  mito 6  (predict for NP_191035.2)
other 8,  mito 6  (predict for NP_850703.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G54750
ath-r.7
for
AT3G54750
ath-m.9
for
AT3G54750
ath-e.2
for
AT3G54750
ath-m.4.bio
for
AT3G54750
ath-m.4.hor
for
AT3G54750
ath-m.4.lig
for
AT3G54750
ath-m.4.str
for
AT3G54750
ath-m.4.tis
for
AT3G54750
bna-r.1
for
106412273
bna-r.1
for
106391274
bna-r.1
for
106412390
ghi-r.1
for
107925687
ghi-r.1
for
121229663
ghi-r.1
for
121219566
cit-r.1
for
102614742
gma-u.5
for
100782210
gma-u.5
for
100816076
gma-u.5
for
100796531
vvi-u.5
for
104877384
vvi-u.5
for
100257121
vvi-u.5
for
100245124
ppo-u.5
for
7455613
ppo-u.5
for
7488068
mtr-u.5
for
25499530
mtr-u.5
for
25497873
sly-u.5
for
101266252
sot-r.1
for
102591670
nta-r.1
for
107827100
nta-r.1
for
107832270
nta-r.1
for
107795246
osa-u.5
for
4352823
zma-u.5
for
100274059
tae-r.2
for
123079383
tae-r.2
for
123119229
hvu-r.1
for
123444570
sbi-r.1
for
8071492
bdi-r.1
for
100824058
bdi-r.1
for
100822370
cre-r.1
for
CHLRE_03g197600v5


Ortholog ID: 4407
Species ath bna bna bna ghi ghi ghi cit gma gma gma vvi vvi vvi ppo ppo mtr mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi bdi cre
Symbol AT3G54750 LOC106391274 LOC106412390 LOC106445429 LOC121229663 LOC121219191 LOC107899196 LOC102614742 LOC100782210 LOC100816076 LOC100796531 LOC104877384 LOC100257121 LOC100245124 LOC7455613 LOC7488068 LOC25499530 LOC25497873 LOC101266252 LOC102591670 LOC107827100 LOC107795246 LOC107759942 LOC4352823 LOC100274059 LOC123079383 LOC123119229 LOC123071009 LOC123444570 LOC8071492 LOC100824058 LOC100822370 CHLRE_03g197600v5
Function* downstream neighbor of Son protein downstream neighbor of son homolog protein downstream neighbor of Son protein downstream neighbor of son homolog protein downstream neighbor of Son uncharacterized LOC121219191 protein downstream neighbor of Son uncharacterized LOC102614742 uncharacterized LOC100782210 uncharacterized LOC100816076 protein downstream neighbor of Son uncharacterized LOC104877384 uncharacterized LOC100257121 uncharacterized LOC100245124 uncharacterized LOC7455613 uncharacterized LOC7488068 protein downstream neighbor of Son protein downstream neighbor of Son uncharacterized LOC101266252 protein downstream neighbor of son homolog uncharacterized LOC107827100 uncharacterized LOC107795246 uncharacterized LOC107759942 uncharacterized LOC4352823 uncharacterized LOC100274059 uncharacterized LOC123079383 protein downstream neighbor of Son uncharacterized LOC123071009 uncharacterized LOC123444570 protein downstream neighbor of Son uncharacterized LOC100824058 protein downstream neighbor of Son uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 4
ath03460 Fanconi anemia pathway 3
ath03082 ATP-dependent chromatin remodeling 2
ath00270 Cysteine and methionine metabolism 2
ath03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 6
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00230 Purine metabolism 2
gma00240 Pyrimidine metabolism 2
gma00480 Glutathione metabolism 2
gma01232 Nucleotide metabolism 2
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 7
vvi03420 Nucleotide excision repair 4
vvi03410 Base excision repair 3
vvi03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 5
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo00480 Glutathione metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 8
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 2
mtr03440 Homologous recombination 2
mtr03460 Fanconi anemia pathway 2
mtr04148 Efferocytosis 2
mtr04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 5
mtr03420 Nucleotide excision repair 2
mtr03430 Mismatch repair 2
mtr03440 Homologous recombination 2
mtr03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 2
sot03420 Nucleotide excision repair 2
sot03430 Mismatch repair 2
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
osa03460 Fanconi anemia pathway 2
osa03030 DNA replication 2
osa04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 4
zma03440 Homologous recombination 3
zma04814 Motor proteins 2
zma03420 Nucleotide excision repair 2
zma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04814 Motor proteins 3
tae00270 Cysteine and methionine metabolism 3
tae03430 Mismatch repair 2
tae03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 3
tae00240 Pyrimidine metabolism 3
tae00480 Glutathione metabolism 3
tae01232 Nucleotide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00220 Arginine biosynthesis 2
hvu00250 Alanine, aspartate and glutamate metabolism 2
hvu01230 Biosynthesis of amino acids 2
hvu04141 Protein processing in endoplasmic reticulum 2
hvu04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824640 106391274 106412390 106445429 121229663 121219191 107899196 102614742 100782210 100816076 100796531 104877384 100257121 100245124 7455613 7488068 25499530 25497873 101266252 102591670 107827100 107795246 107759942 4352823 100274059 123079383 123119229 123071009 123444570 8071492 100824058 100822370 5718785
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