ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	PBF1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
ath-r.7	PBF1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
ath-m.9	PBF1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
ath-e.2	PBF1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
ath-m.4.bio	PBF1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
ath-m.4.hor	PBF1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
ath-m.4.lig	PBF1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
ath-m.4.str	PBF1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
ath-m.4.tis	PBF1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
gma-u.5	100810291	proteasome subunit beta type-1-like
gma-u.5	100306148	putative proteasome subunit beta type-1
vvi-u.5	100266090	proteasome subunit beta type-1
ppo-u.5	7494005	proteasome subunit beta type-1
ppo-u.5	7464862	proteasome subunit beta type-1
mtr-u.5	11433762	proteasome subunit beta type-1
mtr-u.5	11441958	proteasome subunit beta type-1
sly-u.5	101266585	proteasome subunit beta type-1
osa-u.5	4346117	proteasome subunit beta type-1-like
osa-u.5	4347507	proteasome subunit beta type-1-like
zma-u.5	100280821	uncharacterized LOC100280821
zma-u.5	103632974	proteasome subunit beta type-1
zma-u.5	100286342	proteasome subunit beta type 1

Top 50 coexpressed genes to PBF1 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to PBF1 (ath-u.5 coexpression data)

CoexMap"825253"

[Cytoscape]

Annotation

functional annotation

KEGG

ath03050 [list] [network] Proteasome (61 genes)

GO BP

GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process	(219 genes)	TAS
GO:0050832 [list] [network] defense response to fungus	(282 genes)	IDA

GO CC

GO:0019774 [list] [network] proteasome core complex, beta-subunit complex	(11 genes)	ISS
GO:0005839 [list] [network] proteasome core complex	(23 genes)	TAS
GO:0000502 [list] [network] proteasome complex	(53 genes)	IDA
GO:0005829 [list] [network] cytosol	(2593 genes)	HDA
GO:0005886 [list] [network] plasma membrane	(2598 genes)	HDA
GO:0009507 [list] [network] chloroplast	(5014 genes)	ISM

GO MF

Protein

NP_001030905.1 [sequence] [blastp]
NP_001190146.1 [sequence] [blastp]
NP_191641.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 4, cyto 2, cysk_nucl 2	(predict for NP_001030905.1)
chlo 4, nucl 3, cyto 2, chlo_mito 2	(predict for NP_001190146.1)
chlo 4, nucl 3, cyto 2, chlo_mito 2	(predict for NP_191641.1)

Subcellular
localization
TargetP

other 9	(predict for NP_001030905.1)
other 9	(predict for NP_001190146.1)
other 9	(predict for NP_191641.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for PBF1	ath-r.7 for PBF1	ath-m.9 for PBF1	ath-e.2 for PBF1	ath-m.4.bio for PBF1	ath-m.4.hor for PBF1	ath-m.4.lig for PBF1	ath-m.4.str for PBF1	ath-m.4.tis for PBF1	gma-u.5 for 100810291	gma-u.5 for 100306148	vvi-u.5 for 100266090	ppo-u.5 for 7494005	ppo-u.5 for 7464862	mtr-u.5 for 11433762	mtr-u.5 for 11441958	sly-u.5 for 101266585	osa-u.5 for 4346117	osa-u.5 for 4347507	zma-u.5 for 100280821	zma-u.5 for 103632974	zma-u.5 for 100286342

Ortholog

Ortholog ID: 3821

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

PBF1

Function^*

N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein