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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   ROC4   rotamase CYP 4 
 ath-r.7   ROC4   rotamase CYP 4 
 ath-m.9   ROC4   rotamase CYP 4 
 ath-e.2   ROC4   rotamase CYP 4 
 ath-m.4.bio   ROC4   rotamase CYP 4 
 ath-m.4.hor   ROC4   rotamase CYP 4 
 ath-m.4.lig   ROC4   rotamase CYP 4 
 ath-m.4.str   ROC4   rotamase CYP 4 
 ath-m.4.tis   ROC4   rotamase CYP 4 
 gma-u.5   CYP14   peptidyl-prolyl cis-trans isomerase CYP14 
 gma-u.5   CYP12   peptidyl-prolyl cis-trans isomerase CYP12 
 gma-u.5   CYP28   peptidyl-prolyl cis-trans isomerase CYP28 
 vvi-u.5   100250386   peptidyl-prolyl cis-trans isomerase 
 ppo-u.5   7487769   uncharacterized LOC7487769 
 mtr-u.5   25484726   peptidyl-prolyl cis-trans isomerase, chloroplastic 
 mtr-u.5   11423421   peptidyl-prolyl cis-trans isomerase, chloroplastic 
 osa-u.5   4327912   peptidyl-prolyl cis-trans isomerase A1 
 zma-u.5   103634647   peptidyl-prolyl cis-trans isomerase-like 

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Top 50 coexpressed genes to ROC4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ROC4 (ath-u.5 coexpression data)

CoexMap"825376"


athROC4 | Entrez gene ID : 825376      
Species ath gma vvi ppo mtr osa zma tae hvu ghi bdi cit bra cre sbi bna sly nta sot
Paralog 9 3 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000413 [list] [network] protein peptidyl-prolyl isomerization  (3 genes)  IDA  
GO:0019344 [list] [network] cysteine biosynthetic process  (12 genes)  IMP  
GO:0045036 [list] [network] protein targeting to chloroplast  (20 genes)  IDA  
GO:0010555 [list] [network] response to mannitol  (27 genes)  IMP  
GO:0009642 [list] [network] response to light intensity  (168 genes)  IMP  
GO:0006979 [list] [network] response to oxidative stress  (384 genes)  IMP  
GO:0009651 [list] [network] response to salt stress  (473 genes)  IMP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IEP  
GO:0007165 [list] [network] signal transduction  (1102 genes)  ISS  
GO CC
GO:0031977 [list] [network] thylakoid lumen  (69 genes)  HDA  
GO:0022626 [list] [network] cytosolic ribosome  (295 genes)  HDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0048046 [list] [network] apoplast  (340 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0003755 [list] [network] peptidyl-prolyl cis-trans isomerase activity  (32 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001154684.1 [sequence] [blastp]
NP_001190159.1 [sequence] [blastp]
NP_191762.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  cyto 2,  nucl 1,  plas 1,  vacu 1,  chlo_mito 1,  nucl_plas 1  (predict for NP_001154684.1)
chlo 10  (predict for NP_001190159.1)
chlo 10  (predict for NP_191762.1)
Subcellular
localization
TargetP
mito 5  (predict for NP_001154684.1)
chlo 9  (predict for NP_001190159.1)
chlo 9  (predict for NP_191762.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
ROC4

.
ath-r.7
for
ROC4

.
ath-m.9
for
ROC4

.
ath-e.2
for
ROC4

.
ath-m.4.bio
for
ROC4

.
ath-m.4.hor
for
ROC4

.
ath-m.4.lig
for
ROC4

.
ath-m.4.str
for
ROC4

.
ath-m.4.tis
for
ROC4

.
gma-u.5
for
CYP14

.
gma-u.5
for
CYP12

.
gma-u.5
for
CYP28

.
vvi-u.5
for
100250386

.
ppo-u.5
for
7487769

.
mtr-u.5
for
25484726

.
mtr-u.5
for
11423421

.
osa-u.5
for
4327912

.
zma-u.5
for
103634647

.


Ortholog ID: 8996
Species ath gma gma osa zma bra bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre cre sbi cit bdi
Symbol ROC4 CYP12 CYP28 LOC4327912 LOC103634647 LOC103862800 LOC103842032 LOC100250386 LOC7487769 LOC25484726 LOC11423421 LOC123060766 LOC123069323 LOC123443228 LOC107897163 LOC107910542 LOC106396794 LOC106444986 CHLRE_12g544114v5 CHLRE_12g544150v5 LOC8054689 LOC102610362 LOC100838780
Function* rotamase CYP 4 peptidyl-prolyl cis-trans isomerase CYP12 peptidyl-prolyl cis-trans isomerase CYP28 peptidyl-prolyl cis-trans isomerase A1 peptidyl-prolyl cis-trans isomerase-like peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic peptidyl-prolyl cis-trans isomerase uncharacterized LOC7487769 peptidyl-prolyl cis-trans isomerase, chloroplastic peptidyl-prolyl cis-trans isomerase, chloroplastic peptidyl-prolyl cis-trans isomerase peptidyl-prolyl cis-trans isomerase peptidyl-prolyl cis-trans isomerase, chloroplastic-like peptidyl-prolyl cis-trans isomerase A1 peptidyl-prolyl cis-trans isomerase A1 peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic-like peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic-like uncharacterized protein uncharacterized protein peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic uncharacterized LOC102610362 peptidyl-prolyl cis-trans isomerase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00051 Fructose and mannose metabolism 2
gma00230 Purine metabolism 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 4
osa00220 Arginine biosynthesis 3
osa00250 Alanine, aspartate and glutamate metabolism 2
osa01210 2-Oxocarboxylic acid metabolism 2
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00230 Purine metabolism 6
bra01240 Biosynthesis of cofactors 6
bra00250 Alanine, aspartate and glutamate metabolism 5
bra01232 Nucleotide metabolism 5
bra01230 Biosynthesis of amino acids 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 5
bra00195 Photosynthesis 5
bra00710 Carbon fixation by Calvin cycle 4
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 3
vvi03010 Ribosome 3
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00860 Porphyrin metabolism 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 5
ghi03010 Ribosome 4
ghi00010 Glycolysis / Gluconeogenesis 4
ghi00051 Fructose and mannose metabolism 4
ghi01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 6
ghi01230 Biosynthesis of amino acids 5
ghi00030 Pentose phosphate pathway 4
ghi01200 Carbon metabolism 4
ghi00051 Fructose and mannose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 6
bna00300 Lysine biosynthesis 4
bna00220 Arginine biosynthesis 2
bna01210 2-Oxocarboxylic acid metabolism 2
bna00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 3
bna00220 Arginine biosynthesis 2
bna01210 2-Oxocarboxylic acid metabolism 2
bna00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 9
bdi03018 RNA degradation 3
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825376 100775978 100526955 4327912 103634647 103862800 103842032 100250386 7487769 25484726 11423421 123060766 123069323 123443228 107897163 107910542 106396794 106444986 5719552 66055744 8054689 102610362 100838780
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