ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	MET1	methyltransferase 1
gma-u.5	100797667	DNA (cytosine-5)-methyltransferase 1
gma-u.5	100802765	DNA (cytosine-5)-methyltransferase 1
vvi-u.5	100240896	DNA (cytosine-5)-methyltransferase 1
vvi-u.5	100251127	DNA (cytosine-5)-methyltransferase 1
vvi-u.5	100252276	DNA (cytosine-5)-methyltransferase 1B
ppo-u.5	112325061	DNA (cytosine-5)-methyltransferase 1
ppo-u.5	7463012	DNA (cytosine-5)-methyltransferase 1
ppo-u.5	7484095	DNA (cytosine-5)-methyltransferase 1
mtr-u.5	11408961	DNA (cytosine-5)-methyltransferase 1
mtr-u.5	25486610	DNA (cytosine-5)-methyltransferase 1
sly-u.5	MET1	DNA (cytosine-5)-methyltransferase 1
osa-u.5	4342575	DNA (cytosine-5)-methyltransferase 1B-like
osa-u.5	4334435	DNA (cytosine-5)-methyltransferase 1A-like
zma-u.5	103632028	DNA (cytosine-5)-methyltransferase 1B
zma-u.5	542082	DNA methyl transferase 1

Top 50 coexpressed genes to MET1 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to MET1 (ath-u.5 coexpression data)

CoexMap"827052"

[Cytoscape]

Annotation

functional annotation

KEGG

ath00270 [list] [network] Cysteine and methionine metabolism (125 genes)

GO BP

GO:0009294 [list] [network] DNA-mediated transformation

(26 genes)

IMP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_001190725.1 [sequence] [blastp]
NP_001319931.1 [sequence] [blastp]
NP_193150.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 7, nucl 2	(predict for NP_001190725.1)
plas 7, nucl 2	(predict for NP_001319931.1)
plas 7, nucl 2	(predict for NP_193150.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001190725.1)
other 8	(predict for NP_001319931.1)
other 8	(predict for NP_193150.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for MET1	gma-u.5 for 100797667	gma-u.5 for 100802765	vvi-u.5 for 100240896	vvi-u.5 for 100251127	vvi-u.5 for 100252276	ppo-u.5 for 112325061	ppo-u.5 for 7463012	ppo-u.5 for 7484095	mtr-u.5 for 11408961	mtr-u.5 for 25486610	sly-u.5 for MET1	osa-u.5 for 4342575	osa-u.5 for 4334435	zma-u.5 for 103632028	zma-u.5 for 542082

Ortholog

Ortholog ID: 3952

Species

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

MET1

Function^*

DNA (cytosine-5)-methyltransferase 1

DNA (cytosine-5)-methyltransferase 1-like

DNA (cytosine-5)-methyltransferase 1

DNA (cytosine-5)-methyltransferase 1B-like

DNA (cytosine-5)-methyltransferase 1

DNA (cytosine-5)-methyltransferase 1B

DNA (cytosine-5)-methyltransferase 1

DNA (cytosine-5)-methyltransferase 1B-like

DNA (cytosine-5)-methyltransferase 1B

DNA (cytosine-5)-methyltransferase 1B-like

DNA (cytosine-5)-methyltransferase 1A-like

DNA methyl transferase 1

DNA (cytosine-5)-methyltransferase 1B

DNA (cytosine-5)-methyltransferase 1A

DNA (cytosine-5)-methyltransferase 1B

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03030	DNA replication	4
bra03440	Homologous recombination	4
bra03420	Nucleotide excision repair	2
bra03430	Mismatch repair	2
bra03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03030	DNA replication	7
bna00270	Cysteine and methionine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	4
bna03030	DNA replication	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03030	DNA replication	11
ghi00270	Cysteine and methionine metabolism	2
ghi03410	Base excision repair	2
ghi03420	Nucleotide excision repair	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03030	DNA replication	11
ghi00270	Cysteine and methionine metabolism	2
ghi03410	Base excision repair	2
ghi03420	Nucleotide excision repair	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00970	Aminoacyl-tRNA biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03030	DNA replication	5
gma03420	Nucleotide excision repair	3
gma03430	Mismatch repair	3
gma00270	Cysteine and methionine metabolism	3
gma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03030	DNA replication	5
gma03440	Homologous recombination	2
gma00230	Purine metabolism	2
gma00240	Pyrimidine metabolism	2
gma00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00270	Cysteine and methionine metabolism	2
vvi00330	Arginine and proline metabolism	2
vvi01200	Carbon metabolism	2
vvi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03030	DNA replication	11
ppo03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00270	Cysteine and methionine metabolism	3
ppo00230	Purine metabolism	2
ppo00240	Pyrimidine metabolism	2
ppo00480	Glutathione metabolism	2
ppo01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3
mtr00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03420	Nucleotide excision repair	3
mtr03440	Homologous recombination	3
mtr03460	Fanconi anemia pathway	3
mtr00270	Cysteine and methionine metabolism	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03013	Nucleocytoplasmic transport	3
sly00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00230	Purine metabolism	2
sot00240	Pyrimidine metabolism	2
sot00480	Glutathione metabolism	2
sot01232	Nucleotide metabolism	2
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03030	DNA replication	3
sot00230	Purine metabolism	2
sot00240	Pyrimidine metabolism	2
sot00480	Glutathione metabolism	2
sot01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03460	Fanconi anemia pathway	3
nta00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03460	Fanconi anemia pathway	2
nta00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03030	DNA replication	12
osa03440	Homologous recombination	3
osa03420	Nucleotide excision repair	3
osa03430	Mismatch repair	2
osa03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04814	Motor proteins	4
osa00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03030	DNA replication	3
zma03410	Base excision repair	3
zma00270	Cysteine and methionine metabolism	2
zma03082	ATP-dependent chromatin remodeling	2
zma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03030	DNA replication	3
zma03410	Base excision repair	3
zma00270	Cysteine and methionine metabolism	2
zma03420	Nucleotide excision repair	2
zma03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03030	DNA replication	10
tae03430	Mismatch repair	8
tae03410	Base excision repair	5
tae03420	Nucleotide excision repair	5
tae00270	Cysteine and methionine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03030	DNA replication	6
sbi03410	Base excision repair	3
sbi03420	Nucleotide excision repair	3
sbi03440	Homologous recombination	3
sbi03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03030	DNA replication	4
bdi03430	Mismatch repair	4
bdi03410	Base excision repair	3
bdi03420	Nucleotide excision repair	3
bdi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03030	DNA replication	6

Expression

Expression pattern

Entrez Gene ID^*

103864404

103842448

106371341

106446455

107934345

107959775

102627333

127898681

100802765

100797667

100240896

100252276

7463012

7484095

25486610

11408961

543721

102604332

102587106

107759467

107774645

4342575

4334435

542082

103632028

123044893

123426213

8060753

8061163

100829061

5723973

The preparation time of this page was 0.2 [sec].


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	1	2	3	3	2	1	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to MET1 (ath-u.5 coexpression data)

Top 50 enrichment test to MET1 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**