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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   PRD1   putative recombination initiation defect 1 
 ath-m.4.bio   PRD1   putative recombination initiation defect 1 
 ath-m.4.hor   PRD1   putative recombination initiation defect 1 
 ath-m.4.lig   PRD1   putative recombination initiation defect 1 
 ath-m.4.str   PRD1   putative recombination initiation defect 1 
 ath-m.4.tis   PRD1   putative recombination initiation defect 1 
 bra-r.6   103858589   protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 
 bna-r.1   106388550   protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 
 bna-r.1   106438809   protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 
 cit-r.1   102619963   protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 
 vvi-u.5   100248619   protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 
 mtr-u.5   11444167   protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 
 sly-u.5   101247714   protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 
 nta-r.1   107822484   protein PUTATIVE RECOMBINATION INITIATION DEFECT 1-like 
 nta-r.1   107770290   protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 
 osa-u.5   4335538   protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 
 zma-u.5   103638879   protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 
 tae-r.2   123188978   protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 
 tae-r.2   123053069   protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 
 tae-r.2   123045233   protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 
 hvu-r.1   123426459   protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 
 sbi-r.1   8083185   protein PRD1 
 bdi-r.1   100832689   protein PRD1 

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Top 50 coexpressed genes to PRD1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PRD1 (ath-m.9 coexpression data)

CoexMap"827058"


athPRD1 | Entrez gene ID : 827058      
Species ath bra bna cit vvi mtr sly nta osa zma tae hvu sbi bdi gma sot ppo cre ghi
Paralog 6 1 2 1 1 1 1 2 1 1 3 1 1 1 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042138 [list] [network] meiotic DNA double-strand break formation  (7 genes)  IGI IMP  
GO:0051026 [list] [network] chiasma assembly  (16 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA  
GO MF
GO:0042803 [list] [network] protein homodimerization activity  (237 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001319933.1 [sequence] [blastp]
NP_001329589.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 6,  E.R. 2,  nucl 1,  vacu 1,  golg 1  (predict for NP_001319933.1)
plas 6,  E.R. 2,  nucl 1,  vacu 1,  golg 1  (predict for NP_001329589.1)
Subcellular
localization
TargetP
chlo 3,  other 3  (predict for NP_001319933.1)
chlo 3,  other 3  (predict for NP_001329589.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
PRD1
ath-m.4.bio
for
PRD1
ath-m.4.hor
for
PRD1
ath-m.4.lig
for
PRD1
ath-m.4.str
for
PRD1
ath-m.4.tis
for
PRD1
bra-r.6
for
103858589
bna-r.1
for
106388550
bna-r.1
for
106438809
cit-r.1
for
102619963
vvi-u.5
for
100248619
mtr-u.5
for
11444167
sly-u.5
for
101247714
nta-r.1
for
107822484
nta-r.1
for
107770290
osa-u.5
for
4335538
zma-u.5
for
103638879
tae-r.2
for
123188978
tae-r.2
for
123053069
tae-r.2
for
123045233
hvu-r.1
for
123426459
sbi-r.1
for
8083185
bdi-r.1
for
100832689


Ortholog ID: 11360
Species bra bna bna cit vvi mtr sly nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC103858589 LOC106388550 LOC106438809 LOC102619963 LOC100248619 LOC11444167 LOC101247714 LOC107822484 LOC107770290 LOC4335538 LOC103638879 LOC123188978 LOC123053069 LOC123045233 LOC123426459 LOC8083185 LOC100832689
Function* protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 protein PUTATIVE RECOMBINATION INITIATION DEFECT 1-like protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 protein PRD1 protein PRD1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00230 Purine metabolism 4
mtr00240 Pyrimidine metabolism 4
mtr00480 Glutathione metabolism 4
mtr01232 Nucleotide metabolism 4
mtr03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 6
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00290 Valine, leucine and isoleucine biosynthesis 3
zma00650 Butanoate metabolism 3
zma00660 C5-Branched dibasic acid metabolism 3
zma00770 Pantothenate and CoA biosynthesis 3
zma01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu03013 Nucleocytoplasmic transport 2
hvu03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103858589 106388550 106438809 102619963 100248619 11444167 101247714 107822484 107770290 4335538 103638879 123188978 123053069 123045233 123426459 8083185 100832689
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