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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   LDL3   LSD1-like 3 
 ath-r.7   LDL3   LSD1-like 3 
 ath-m.9   LDL3   LSD1-like 3 
 ath-e.2   LDL3   LSD1-like 3 
 ath-m.4.bio   LDL3   LSD1-like 3 
 ath-m.4.hor   LDL3   LSD1-like 3 
 ath-m.4.lig   LDL3   LSD1-like 3 
 ath-m.4.str   LDL3   LSD1-like 3 
 ath-m.4.tis   LDL3   LSD1-like 3 
 gma-u.5   100791869   lysine-specific histone demethylase 1 homolog 3 
 gma-u.5   100779479   lysine-specific histone demethylase 1 homolog 3 
 vvi-u.5   100255769   lysine-specific histone demethylase 1 homolog 3 
 ppo-u.5   7479699   lysine-specific histone demethylase 1 homolog 3 
 ppo-u.5   7493945   lysine-specific histone demethylase 1 homolog 3 
 mtr-u.5   11416384   lysine-specific histone demethylase 1 homolog 3 
 mtr-u.5   11426826   lysine-specific histone demethylase 1 homolog 3 
 sly-u.5   101247522   lysine-specific histone demethylase 1 homolog 3 
 osa-u.5   4349214   lysine-specific histone demethylase 1 homolog 3 
 zma-u.5   103637393   lysine-specific histone demethylase 1 homolog 3 

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Top 50 coexpressed genes to LDL3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LDL3 (ath-u.5 coexpression data)

CoexMap"827325"


athLDL3 | Entrez gene ID : 827325      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 9 2 1 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
Protein NP_001319957.1 [sequence] [blastp]
NP_001328664.1 [sequence] [blastp]
NP_001328665.1 [sequence] [blastp]
NP_001328666.1 [sequence] [blastp]
NP_193364.5 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  chlo 2,  E.R. 2,  nucl_plas 2  (predict for NP_001319957.1)
nucl 3,  chlo 2,  E.R. 2,  nucl_plas 2  (predict for NP_001328664.1)
nucl 3,  chlo 2,  E.R. 2,  nucl_plas 2  (predict for NP_001328665.1)
nucl 3,  chlo 2,  E.R. 2,  nucl_plas 2  (predict for NP_001328666.1)
nucl 3,  chlo 2,  E.R. 2,  nucl_plas 2  (predict for NP_193364.5)
Subcellular
localization
TargetP
other 9  (predict for NP_001319957.1)
other 9  (predict for NP_001328664.1)
other 9  (predict for NP_001328665.1)
other 9  (predict for NP_001328666.1)
other 9  (predict for NP_193364.5)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
LDL3
ath-r.7
for
LDL3
ath-m.9
for
LDL3
ath-e.2
for
LDL3
ath-m.4.bio
for
LDL3
ath-m.4.hor
for
LDL3
ath-m.4.lig
for
LDL3
ath-m.4.str
for
LDL3
ath-m.4.tis
for
LDL3
gma-u.5
for
100791869
gma-u.5
for
100779479
vvi-u.5
for
100255769
ppo-u.5
for
7479699
ppo-u.5
for
7493945
mtr-u.5
for
11416384
mtr-u.5
for
11426826
sly-u.5
for
101247522
osa-u.5
for
4349214
zma-u.5
for
103637393


Ortholog ID: 9017
Species ath bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot nta osa zma tae tae hvu sbi bdi
Symbol LDL3 LOC103849514 LOC106360660 LOC106415213 LOC107910719 LOC107934347 LOC102614145 LOC100791869 LOC100779479 LOC100255769 LOC7493945 LOC7479699 LOC11426826 LOC11416384 LOC101247522 LOC102586217 LOC107795945 LOC4349214 LOC103637393 LOC123129088 LOC123146258 LOC123402801 LOC8062879 LOC100845102
Function* LSD1-like 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3 lysine-specific histone demethylase 1 homolog 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 2
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
ghi04145 Phagosome 2
ghi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 3
ghi04070 Phosphatidylinositol signaling system 3
ghi04145 Phagosome 3
ghi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 5
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
mtr04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
nta04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827325 103849514 106360660 106415213 107910719 107934347 102614145 100791869 100779479 100255769 7493945 7479699 11426826 11416384 101247522 102586217 107795945 4349214 103637393 123129088 123146258 123402801 8062879 100845102
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