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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   NCED4   nine-cis-epoxycarotenoid dioxygenase 4 
 ath-r.7   NCED4   nine-cis-epoxycarotenoid dioxygenase 4 
 ath-m.9   NCED4   nine-cis-epoxycarotenoid dioxygenase 4 
 ath-e.2   NCED4   nine-cis-epoxycarotenoid dioxygenase 4 
 ath-m.4.bio   NCED4   nine-cis-epoxycarotenoid dioxygenase 4 
 ath-m.4.hor   NCED4   nine-cis-epoxycarotenoid dioxygenase 4 
 ath-m.4.lig   NCED4   nine-cis-epoxycarotenoid dioxygenase 4 
 ath-m.4.str   NCED4   nine-cis-epoxycarotenoid dioxygenase 4 
 ath-m.4.tis   NCED4   nine-cis-epoxycarotenoid dioxygenase 4 
 gma-u.5   100777875   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 vvi-u.5   100252859   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 vvi-u.5   100251100   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 ppo-u.5   112327632   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 ppo-u.5   7494613   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 mtr-u.5   11416550   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 mtr-u.5   11409428   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 mtr-u.5   11413490   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 sly-u.5   101250828   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 sly-u.5   101250535   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 osa-u.5   4330451   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like 
 osa-u.5   4352125   9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic-like 
 zma-u.5   103627610   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 zma-u.5   100501454   nine-cis-epoxycarotenoid dioxygenase6 

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Top 50 coexpressed genes to NCED4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to NCED4 (ath-u.5 coexpression data)

CoexMap"827655"


athNCED4 | Entrez gene ID : 827655      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 9 1 2 2 3 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00906 [list] [network] Carotenoid biosynthesis (32 genes)
GO BP
GO:1901811 [list] [network] beta-carotene catabolic process  (1 genes)  IMP  
GO CC
GO:0010287 [list] [network] plastoglobule  (57 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_193652.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 4  (predict for NP_193652.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_193652.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
NCED4
ath-r.7
for
NCED4
ath-m.9
for
NCED4
ath-e.2
for
NCED4
ath-m.4.bio
for
NCED4
ath-m.4.hor
for
NCED4
ath-m.4.lig
for
NCED4
ath-m.4.str
for
NCED4
ath-m.4.tis
for
NCED4
gma-u.5
for
100777875
vvi-u.5
for
100252859
vvi-u.5
for
100251100
ppo-u.5
for
112327632
ppo-u.5
for
7494613
mtr-u.5
for
11416550
mtr-u.5
for
11409428
mtr-u.5
for
11413490
sly-u.5
for
101250828
sly-u.5
for
101250535
osa-u.5
for
4330451
osa-u.5
for
4352125
zma-u.5
for
103627610
zma-u.5
for
100501454


Ortholog ID: 6042
Species ath bra bra bna bna ghi ghi cit gma vvi vvi ppo ppo mtr mtr sly sly sot nta nta osa osa zma zma tae tae hvu sbi bdi
Symbol NCED4 LOC103857159 LOC103834110 LOC125610300 LOC106360920 LOC107946820 LOC107947364 LOC102612995 LOC100777875 LOC100252859 LOC100251100 LOC112327632 LOC7494613 LOC11409428 LOC11416550 LOC101250828 LOC101250535 LOC102581808 LOC107767418 LOC107823578 LOC4352125 LOC4330451 LOC103627610 LOC100501454 LOC123128116 LOC123137906 LOC123401792 LOC110434687 LOC100845393
Function* nine-cis-epoxycarotenoid dioxygenase 4 probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic putative carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic nine-cis-epoxycarotenoid dioxygenase6 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplastic-like 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 2
cit04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00943 Isoflavonoid biosynthesis 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 7
ppo00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00630 Glyoxylate and dicarboxylate metabolism 3
ppo01200 Carbon metabolism 3
ppo00195 Photosynthesis 2
ppo00020 Citrate cycle (TCA cycle) 2
ppo00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 4
mtr00906 Carotenoid biosynthesis 3
mtr04082 Neuroactive ligand signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00730 Thiamine metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00592 alpha-Linolenic acid metabolism 3
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 4
tae00906 Carotenoid biosynthesis 3
tae00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00908 Zeatin biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827655 103857159 103834110 125610300 106360920 107946820 107947364 102612995 100777875 100252859 100251100 112327632 7494613 11409428 11416550 101250828 101250535 102581808 107767418 107823578 4352125 4330451 103627610 100501454 123128116 123137906 123401792 110434687 100845393
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