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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PPOX   Flavin containing amine oxidoreductase family 
 ath-r.7   PPOX   Flavin containing amine oxidoreductase family 
 ath-m.9   PPOX   Flavin containing amine oxidoreductase family 
 ath-e.2   PPOX   Flavin containing amine oxidoreductase family 
 ath-m.4.bio   PPOX   Flavin containing amine oxidoreductase family 
 ath-m.4.hor   PPOX   Flavin containing amine oxidoreductase family 
 ath-m.4.lig   PPOX   Flavin containing amine oxidoreductase family 
 ath-m.4.str   PPOX   Flavin containing amine oxidoreductase family 
 ath-m.4.tis   PPOX   Flavin containing amine oxidoreductase family 
 bra-r.6   103844594   protoporphyrinogen oxidase 1, chloroplastic 
 bna-r.1   106370913   protoporphyrinogen oxidase 1, chloroplastic 
 bna-r.1   106400987   protoporphyrinogen oxidase 1, chloroplastic 
 ghi-r.1   107912235   protoporphyrinogen oxidase 1, chloroplastic 
 ghi-r.1   107924477   protoporphyrinogen oxidase 1, chloroplastic 
 cit-r.1   102607324   protoporphyrinogen oxidase 1, chloroplastic 
 gma-u.5   100810190   protoporphyrinogen oxidase 1, chloroplastic 
 vvi-u.5   100243415   protoporphyrinogen oxidase 1, chloroplastic 
 ppo-u.5   7486839   protoporphyrinogen oxidase 1, chloroplastic 
 ppo-u.5   7460503   protoporphyrinogen oxidase 1, chloroplastic 
 mtr-u.5   25484740   protoporphyrinogen oxidase 1, chloroplastic 
 sly-u.5   101259974   protoporphyrinogen oxidase 
 sot-r.1   102583969   protoporphyrinogen oxidase, chloroplastic-like 
 nta-r.1   107827378   protoporphyrinogen oxidase, chloroplastic 
 nta-r.1   107780878   protoporphyrinogen oxidase, chloroplastic-like 
 osa-u.5   4327918   protoporphyrinogen oxidase, chloroplastic-like 
 zma-u.5   542554   protoporphyrinogen IX oxidase (plastidic)1 
 tae-r.2   123110370   protoporphyrinogen oxidase, chloroplastic 
 tae-r.2   123102202   protoporphyrinogen oxidase, chloroplastic 
 tae-r.2   123119396   protoporphyrinogen oxidase, chloroplastic 
 hvu-r.1   123397776   protoporphyrinogen oxidase, chloroplastic 
 sbi-r.1   8078135   protoporphyrinogen oxidase, chloroplastic 
 bdi-r.1   100826753   protoporphyrinogen oxidase, chloroplastic 
 cre-r.1   CHLRE_09g396300v5   uncharacterized protein 

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Top 50 coexpressed genes to PPOX (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PPOX (ath-u.5 coexpression data)

CoexMap"827991"


athPPOX | Entrez gene ID : 827991      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 2 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00860 [list] [network] Porphyrin metabolism (57 genes)
ath01240 [list] [network] Biosynthesis of cofactors (237 genes)
GO BP
GO:0006779 [list] [network] porphyrin-containing compound biosynthetic process  (41 genes)  TAS  
GO CC
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0004729 [list] [network] oxygen-dependent protoporphyrinogen oxidase activity  (1 genes)  IEA IGI  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_192078.1 [sequence] [blastp]
NP_849283.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  extr 1  (predict for NP_192078.1)
chlo 9  (predict for NP_849283.1)
Subcellular
localization
TargetP
mito 5,  chlo 3  (predict for NP_192078.1)
mito 5,  chlo 3  (predict for NP_849283.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PPOX
ath-r.7
for
PPOX
ath-m.9
for
PPOX
ath-e.2
for
PPOX
ath-m.4.bio
for
PPOX
ath-m.4.hor
for
PPOX
ath-m.4.lig
for
PPOX
ath-m.4.str
for
PPOX
ath-m.4.tis
for
PPOX
bra-r.6
for
103844594
bna-r.1
for
106370913
bna-r.1
for
106400987
ghi-r.1
for
107912235
ghi-r.1
for
107924477
cit-r.1
for
102607324
gma-u.5
for
100810190
vvi-u.5
for
100243415
ppo-u.5
for
7486839
ppo-u.5
for
7460503
mtr-u.5
for
25484740
sly-u.5
for
101259974
sot-r.1
for
102583969
nta-r.1
for
107827378
nta-r.1
for
107780878
osa-u.5
for
4327918
zma-u.5
for
542554
tae-r.2
for
123110370
tae-r.2
for
123102202
tae-r.2
for
123119396
hvu-r.1
for
123397776
sbi-r.1
for
8078135
bdi-r.1
for
100826753
cre-r.1
for
CHLRE_09g396300v5


Ortholog ID: 10205
Species ath bra bna bna ghi ghi cit gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol PPOX LOC103844594 LOC106370913 LOC106400987 LOC107912235 LOC107924477 LOC102607324 LOC100810190 LOC100243415 LOC7486839 LOC7460503 LOC25484740 LOC101259974 LOC102583969 LOC107827378 LOC107780878 LOC4327918 LOC542554 LOC123110370 LOC123102202 LOC123119396 LOC123397776 LOC8078135 LOC100826753 CHLRE_09g396300v5
Function* Flavin containing amine oxidoreductase family protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase 1, chloroplastic protoporphyrinogen oxidase protoporphyrinogen oxidase, chloroplastic-like protoporphyrinogen oxidase, chloroplastic protoporphyrinogen oxidase, chloroplastic-like protoporphyrinogen oxidase, chloroplastic-like protoporphyrinogen IX oxidase (plastidic)1 protoporphyrinogen oxidase, chloroplastic protoporphyrinogen oxidase, chloroplastic protoporphyrinogen oxidase, chloroplastic protoporphyrinogen oxidase, chloroplastic protoporphyrinogen oxidase, chloroplastic protoporphyrinogen oxidase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 9
ath01240 Biosynthesis of cofactors 8
ath03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 6
bra00860 Porphyrin metabolism 6
bra03010 Ribosome 5
bra00061 Fatty acid biosynthesis 2
bra01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
bna00860 Porphyrin metabolism 4
bna00561 Glycerolipid metabolism 2
bna00564 Glycerophospholipid metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
bna00860 Porphyrin metabolism 4
bna00561 Glycerolipid metabolism 2
bna00564 Glycerophospholipid metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00561 Glycerolipid metabolism 2
ghi03060 Protein export 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi00261 Monobactam biosynthesis 2
ghi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00561 Glycerolipid metabolism 2
ghi03060 Protein export 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi00261 Monobactam biosynthesis 2
ghi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00860 Porphyrin metabolism 3
cit01240 Biosynthesis of cofactors 3
cit03010 Ribosome 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma00860 Porphyrin metabolism 5
gma01240 Biosynthesis of cofactors 5
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 7
vvi00860 Porphyrin metabolism 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo01240 Biosynthesis of cofactors 5
ppo00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 6
mtr00860 Porphyrin metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00860 Porphyrin metabolism 8
sly01240 Biosynthesis of cofactors 8
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00860 Porphyrin metabolism 8
sot00195 Photosynthesis 7
sot01240 Biosynthesis of cofactors 5
sot00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 6
nta01240 Biosynthesis of cofactors 6
nta00561 Glycerolipid metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 6
nta01240 Biosynthesis of cofactors 6
nta00561 Glycerolipid metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 7
osa00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
tae03060 Protein export 3
tae00860 Porphyrin metabolism 3
tae01240 Biosynthesis of cofactors 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
tae00860 Porphyrin metabolism 3
tae01240 Biosynthesis of cofactors 3
tae03015 mRNA surveillance pathway 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae00860 Porphyrin metabolism 3
tae01240 Biosynthesis of cofactors 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 3
hvu03018 RNA degradation 2
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 4
sbi03010 Ribosome 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00860 Porphyrin metabolism 9
cre01240 Biosynthesis of cofactors 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827991 103844594 106370913 106400987 107912235 107924477 102607324 100810190 100243415 7486839 7460503 25484740 101259974 102583969 107827378 107780878 4327918 542554 123110370 123102202 123119396 123397776 8078135 100826753 5720162
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