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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PARP2   poly(ADP-ribose) polymerase 
 ath-r.7   PARP2   poly(ADP-ribose) polymerase 
 ath-m.9   PARP2   poly(ADP-ribose) polymerase 
 ath-e.2   PARP2   poly(ADP-ribose) polymerase 
 ath-m.4.bio   PARP2   poly(ADP-ribose) polymerase 
 ath-m.4.hor   PARP2   poly(ADP-ribose) polymerase 
 ath-m.4.lig   PARP2   poly(ADP-ribose) polymerase 
 ath-m.4.str   PARP2   poly(ADP-ribose) polymerase 
 ath-m.4.tis   PARP2   poly(ADP-ribose) polymerase 
 bra-r.6   103868216   poly [ADP-ribose] polymerase 2 
 bra-r.6   103858766   poly [ADP-ribose] polymerase 2 
 bna-r.1   106438691   poly [ADP-ribose] polymerase 2 
 bna-r.1   106438673   poly [ADP-ribose] polymerase 2 
 ghi-r.1   107922766   poly [ADP-ribose] polymerase 2 
 ghi-r.1   107912366   poly [ADP-ribose] polymerase 2 
 cit-r.1   102609012   poly [ADP-ribose] polymerase 2-like 
 cit-r.1   102625457   poly [ADP-ribose] polymerase 2-like 
 gma-u.5   100814110   poly [ADP-ribose] polymerase 2-A 
 ppo-u.5   18105286   poly [ADP-ribose] polymerase 2 
 mtr-u.5   25484752   poly [ADP-ribose] polymerase 2 
 sly-u.5   101252016   poly [ADP-ribose] polymerase 2 
 sly-u.5   101251710   poly [ADP-ribose] polymerase 2-like 
 sot-r.1   102604711   poly [ADP-ribose] polymerase 2-like 
 nta-r.1   107812334   poly [ADP-ribose] polymerase 2 
 nta-r.1   107764890   poly [ADP-ribose] polymerase 2 
 osa-u.5   4326478   poly [ADP-ribose] polymerase 2-B 
 osa-u.5   4326479   poly [ADP-ribose] polymerase 2-A 
 zma-u.5   103635146   poly [ADP-ribose] polymerase 2-like 
 tae-r.2   123148594   poly [ADP-ribose] polymerase 2-A 
 tae-r.2   123159695   poly [ADP-ribose] polymerase 2-A 
 hvu-r.1   123410032   poly [ADP-ribose] polymerase 2-A-like 
 sbi-r.1   8075333   poly [ADP-ribose] polymerase 2 
 sbi-r.1   8075336   poly [ADP-ribose] polymerase 2 
 bdi-r.1   100846901   poly [ADP-ribose] polymerase 2 

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Top 50 coexpressed genes to PARP2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PARP2 (ath-u.5 coexpression data)

CoexMap"828049"


athPARP2 | Entrez gene ID : 828049      
Species ath bra bna ghi cit gma ppo mtr sly sot nta osa zma tae hvu sbi bdi vvi cre
Paralog 9 2 2 2 2 1 1 1 2 1 2 2 1 2 1 2 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03410 [list] [network] Base excision repair (50 genes)
GO BP
GO:0030592 [list] [network] DNA ADP-ribosylation  (2 genes)  IDA  
GO:0070212 [list] [network] protein poly-ADP-ribosylation  (3 genes)  IDA  
GO:0006303 [list] [network] double-strand break repair via nonhomologous end joining  (9 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003950 [list] [network] NAD+ poly-ADP-ribosyltransferase activity  (8 genes)  IDA  
Protein NP_001329307.1 [sequence] [blastp]
NP_001329308.1 [sequence] [blastp]
NP_192148.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_001329307.1)
nucl 6,  cyto 1,  cysk 1,  chlo 1,  mito 1,  chlo_mito 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001329308.1)
nucl 6,  cyto 2,  chlo 1,  mito 1,  cysk 1,  chlo_mito 1  (predict for NP_192148.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001329307.1)
other 6  (predict for NP_001329308.1)
other 6  (predict for NP_192148.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PARP2
ath-r.7
for
PARP2
ath-m.9
for
PARP2
ath-e.2
for
PARP2
ath-m.4.bio
for
PARP2
ath-m.4.hor
for
PARP2
ath-m.4.lig
for
PARP2
ath-m.4.str
for
PARP2
ath-m.4.tis
for
PARP2
bra-r.6
for
103868216
bra-r.6
for
103858766
bna-r.1
for
106438691
bna-r.1
for
106438673
ghi-r.1
for
107922766
ghi-r.1
for
107912366
cit-r.1
for
102609012
cit-r.1
for
102625457
gma-u.5
for
100814110
ppo-u.5
for
18105286
mtr-u.5
for
25484752
sly-u.5
for
101252016
sly-u.5
for
101251710
sot-r.1
for
102604711
nta-r.1
for
107812334
nta-r.1
for
107764890
osa-u.5
for
4326478
osa-u.5
for
4326479
zma-u.5
for
103635146
tae-r.2
for
123148594
tae-r.2
for
123159695
hvu-r.1
for
123410032
sbi-r.1
for
8075333
sbi-r.1
for
8075336
bdi-r.1
for
100846901


Ortholog ID: 6310
Species ath bra bra bna bna ghi ghi cit cit gma ppo mtr sly sly sot nta nta osa osa zma tae tae hvu sbi sbi bdi
Symbol PARP2 LOC103868216 LOC103858766 LOC106438691 LOC106438673 LOC107922766 LOC107912366 LOC102609012 LOC102625457 LOC100814110 LOC18105286 LOC25484752 LOC101252016 LOC101251710 LOC102604711 LOC107812334 LOC107764890 LOC4326478 LOC4326479 LOC103635146 LOC123148594 LOC123166761 LOC123410032 LOC8075333 LOC8075336 LOC100846901
Function* poly(ADP-ribose) polymerase poly [ADP-ribose] polymerase 2 poly [ADP-ribose] polymerase 2 poly [ADP-ribose] polymerase 2 poly [ADP-ribose] polymerase 2 poly [ADP-ribose] polymerase 2 poly [ADP-ribose] polymerase 2 poly [ADP-ribose] polymerase 2-like poly [ADP-ribose] polymerase 2-like poly [ADP-ribose] polymerase 2-A poly [ADP-ribose] polymerase 2 poly [ADP-ribose] polymerase 2 poly [ADP-ribose] polymerase 2 poly [ADP-ribose] polymerase 2-like poly [ADP-ribose] polymerase 2-like poly [ADP-ribose] polymerase 2 poly [ADP-ribose] polymerase 2 poly [ADP-ribose] polymerase 2-B poly [ADP-ribose] polymerase 2-A poly [ADP-ribose] polymerase 2-like poly [ADP-ribose] polymerase 2-A poly [ADP-ribose] polymerase 2-A poly [ADP-ribose] polymerase 2-A-like poly [ADP-ribose] polymerase 2 poly [ADP-ribose] polymerase 2 poly [ADP-ribose] polymerase 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 6
ath03030 DNA replication 4
ath03460 Fanconi anemia pathway 4
ath03420 Nucleotide excision repair 3
ath03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 3
bra03420 Nucleotide excision repair 3
bra03440 Homologous recombination 3
bra03410 Base excision repair 2
bra03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00240 Pyrimidine metabolism 8
bna01232 Nucleotide metabolism 8
bna03440 Homologous recombination 5
bna03460 Fanconi anemia pathway 4
bna00230 Purine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00240 Pyrimidine metabolism 8
bna01232 Nucleotide metabolism 8
bna03440 Homologous recombination 5
bna03460 Fanconi anemia pathway 4
bna00230 Purine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03450 Non-homologous end-joining 4
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03450 Non-homologous end-joining 4
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 3
cit03040 Spliceosome 2
cit03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 3
cit03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
gma03410 Base excision repair 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 3
sly03460 Fanconi anemia pathway 2
sly03410 Base excision repair 2
sly03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03410 Base excision repair 3
sot03440 Homologous recombination 3
sot03450 Non-homologous end-joining 3
sot03030 DNA replication 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 5
tae03013 Nucleocytoplasmic transport 2
tae04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 3
tae03460 Fanconi anemia pathway 2
tae00290 Valine, leucine and isoleucine biosynthesis 2
tae00770 Pantothenate and CoA biosynthesis 2
tae01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 3
bdi03030 DNA replication 2
bdi00230 Purine metabolism 2
bdi00240 Pyrimidine metabolism 2
bdi00480 Glutathione metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828049 103868216 103858766 106438691 106438673 107922766 107912366 102609012 102625457 100814110 18105286 25484752 101252016 101251710 102604711 107812334 107764890 4326478 4326479 103635146 123148594 123166761 123410032 8075333 8075336 100846901
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