ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	PHR1	phosphate starvation response 1
ath-r.7	PHR1	phosphate starvation response 1
ath-m.9	PHR1	phosphate starvation response 1
ath-e.2	PHR1	phosphate starvation response 1
ath-m.4.bio	PHR1	phosphate starvation response 1
ath-m.4.hor	PHR1	phosphate starvation response 1
ath-m.4.lig	PHR1	phosphate starvation response 1
ath-m.4.str	PHR1	phosphate starvation response 1
ath-m.4.tis	PHR1	phosphate starvation response 1
ath-u.5	AT3G04450	Homeodomain-like superfamily protein
ath-u.5	PHL1	Homeodomain-like superfamily protein
gma-u.5	PHR9	MYB-CC domain-containing transcription factor PHR9
gma-u.5	PHR10	MYB-CC domain-containing transcription factor PHR10
gma-u.5	PHR22	MYB-CC domain-containing transcription factor PHR22
vvi-u.5	100240786	protein PHOSPHATE STARVATION RESPONSE 1
vvi-u.5	100244545	protein PHOSPHATE STARVATION RESPONSE 1
ppo-u.5	7459549	protein PHOSPHATE STARVATION RESPONSE 1
ppo-u.5	7465946	protein PHR1-LIKE 1
ppo-u.5	7474630	protein PHR1-LIKE 1
mtr-u.5	25499705	protein PHR1-LIKE 1
mtr-u.5	11411041	protein PHR1-LIKE 1
mtr-u.5	11430828	protein PHOSPHATE STARVATION RESPONSE 1
sly-u.5	101257079	protein PHR1-LIKE 1
sly-u.5	101245990	protein PHOSPHATE STARVATION RESPONSE 1-like
sly-u.5	101263818	protein PHOSPHATE STARVATION RESPONSE 1
osa-u.5	4332726	protein PHOSPHATE STARVATION RESPONSE 1-like
osa-u.5	PHR2	protein PHOSPHATE STARVATION RESPONSE 2-like
zma-u.5	100285165	uncharacterized LOC100285165
zma-u.5	100382084	uncharacterized LOC100382084

Annotation

functional annotation

KEGG

GO BP

GO:1903842 [list] [network] response to arsenite ion	(1 genes)	IMP
GO:0055063 [list] [network] sulfate ion homeostasis	(2 genes)	IMP
GO:0071486 [list] [network] cellular response to high light intensity	(6 genes)	IMP
GO:0034765 [list] [network] regulation of monoatomic ion transmembrane transport	(14 genes)	IMP
GO:0016036 [list] [network] cellular response to phosphate starvation	(116 genes)	IGI IMP
GO:0007623 [list] [network] circadian rhythm	(124 genes)	IEP
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1618 genes)	TAS
GO:0010468 [list] [network] regulation of gene expression	(2062 genes)	IMP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

IDA ISM

GO MF

GO:0003700 [list] [network] DNA-binding transcription factor activity	(1620 genes)	ISS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_194590.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto_nucl 5

(predict for NP_194590.2)

Subcellular
localization
TargetP

chlo 6

(predict for NP_194590.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for PHR1	ath-r.7 for PHR1	ath-m.9 for PHR1	ath-e.2 for PHR1	ath-m.4.bio for PHR1	ath-m.4.hor for PHR1	ath-m.4.lig for PHR1	ath-m.4.str for PHR1	ath-m.4.tis for PHR1	ath-u.5 for AT3G04450	ath-u.5 for PHL1	gma-u.5 for PHR9	gma-u.5 for PHR10	gma-u.5 for PHR22	vvi-u.5 for 100240786	vvi-u.5 for 100244545	ppo-u.5 for 7459549	ppo-u.5 for 7465946	ppo-u.5 for 7474630	mtr-u.5 for 25499705	mtr-u.5 for 11411041	mtr-u.5 for 11430828	sly-u.5 for 101257079	sly-u.5 for 101245990	sly-u.5 for 101263818	osa-u.5 for 4332726	osa-u.5 for PHR2	zma-u.5 for 100285165	zma-u.5 for 100382084

Ortholog

Ortholog ID: 1797

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

PHL1

PHR1

PHR33

PHR17

PHR2

Function^*

Homeodomain-like superfamily protein

phosphate starvation response 1

protein PHR1-LIKE 1

protein PHOSPHATE STARVATION RESPONSE 1

protein PHR1-LIKE 1-like

protein PHOSPHATE STARVATION RESPONSE 1

protein PHR1-LIKE 1

protein PHOSPHATE STARVATION RESPONSE 1

MYB-CC domain-containing transcription factor PHR33

MYB-CC domain-containing transcription factor PHR17

protein PHOSPHATE STARVATION RESPONSE 1

protein PHR1-LIKE 1

protein PHOSPHATE STARVATION RESPONSE 1-like

protein PHR1-LIKE 1-like

protein PHR1-LIKE 1

protein PHOSPHATE STARVATION RESPONSE 1

protein PHOSPHATE STARVATION RESPONSE 2-like

protein PHOSPHATE STARVATION RESPONSE 1-like

uncharacterized LOC100382084

uncharacterized LOC100285165

protein PHOSPHATE STARVATION RESPONSE 2

protein PHOSPHATE STARVATION RESPONSE 1-like

protein PHOSPHATE STARVATION RESPONSE 2-like

protein PHOSPHATE STARVATION RESPONSE 1-like

protein PHOSPHATE STARVATION RESPONSE 1

protein PHOSPHATE STARVATION RESPONSE 2

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00910	Nitrogen metabolism	2
ath01310	Nitrogen cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma00073	Cutin, suberine and wax biosynthesis	2
gma00230	Purine metabolism	2
gma01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2
gma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00280	Valine, leucine and isoleucine degradation	3
ppo00620	Pyruvate metabolism	3
ppo00071	Fatty acid degradation	2
ppo00410	beta-Alanine metabolism	2
ppo01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04016	MAPK signaling pathway - plant	3
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	3
sly03013	Nucleocytoplasmic transport	2
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03250	Viral life cycle - HIV-1	2
sot03272	Virion - Hepatitis viruses	2
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	5
zma04120	Ubiquitin mediated proteolysis	3
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	3
hvu04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01240	Biosynthesis of cofactors	2

Expression

Expression pattern

Entrez Gene ID^*

833026

828979

103854619

103834747

111211533

106367759

107923996

107924015

102622820

102620365

100813604

100808743

100244545

100240786

7474630

7465946

25499705

11411041

101245990

102597897

102588550

107817759

107817005

4343086

4332726

100382084

100285165

123077417

123060361

123448735

123442891

110432823

110431636

100833923

100821897

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to PHR1 (ath-u.5 coexpression data)

Top 50 enrichment test to PHR1 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	11	3	2	3	3	3	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to PHR1 (ath-u.5 coexpression data)

Top 50 enrichment test to PHR1 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**