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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PGSIP3   plant glycogenin-like starch initiation protein 3 
 ath-r.7   PGSIP3   plant glycogenin-like starch initiation protein 3 
 ath-m.9   PGSIP3   plant glycogenin-like starch initiation protein 3 
 ath-e.2   PGSIP3   plant glycogenin-like starch initiation protein 3 
 ath-m.4.bio   PGSIP3   plant glycogenin-like starch initiation protein 3 
 ath-m.4.hor   PGSIP3   plant glycogenin-like starch initiation protein 3 
 ath-m.4.lig   PGSIP3   plant glycogenin-like starch initiation protein 3 
 ath-m.4.str   PGSIP3   plant glycogenin-like starch initiation protein 3 
 ath-m.4.tis   PGSIP3   plant glycogenin-like starch initiation protein 3 
 gma-u.5   100812365   UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 
 gma-u.5   100795248   UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 
 gma-u.5   100780684   UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 
 vvi-u.5   100266116   UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 
 ppo-u.5   18104898   UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 
 mtr-u.5   11412568   UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 
 mtr-u.5   112417484   UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 
 sly-u.5   101260637   UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 
 sly-u.5   101255391   UDP-glucuronate:xylan alpha-glucuronosyltransferase 2-like 
 osa-u.5   4331856   UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 
 zma-u.5   100191941   UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 

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Top 50 coexpressed genes to PGSIP3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PGSIP3 (ath-u.5 coexpression data)

CoexMap"829469"


athPGSIP3 | Entrez gene ID : 829469      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 9 3 1 1 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010417 [list] [network] glucuronoxylan biosynthetic process  (12 genes)  IMP  
GO:0045492 [list] [network] xylan biosynthetic process  (31 genes)  IDA IGI  
GO:0009834 [list] [network] plant-type secondary cell wall biogenesis  (47 genes)  IGI  
GO CC
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  IDA ISM  
GO MF
GO:0080116 [list] [network] glucuronoxylan glucuronosyltransferase activity  (4 genes)  IMP  
GO:0015020 [list] [network] glucuronosyltransferase activity  (25 genes)  IDA  
GO:0016757 [list] [network] glycosyltransferase activity  (554 genes)  ISS  
Protein NP_001154284.1 [sequence] [blastp]
NP_001328034.1 [sequence] [blastp]
NP_001328035.1 [sequence] [blastp]
NP_001328036.1 [sequence] [blastp]
NP_195059.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 4,  cyto 2,  plas 1,  extr 1  (predict for NP_001154284.1)
cyto 6,  nucl 1,  E.R. 1,  chlo 1,  vacu 1,  cysk_nucl 1,  nucl_plas 1,  E.R._plas 1  (predict for NP_001328034.1)
cyto 6,  chlo 1,  nucl 1  (predict for NP_001328035.1)
cyto 6,  E.R. 2,  nucl 1,  E.R._plas 1  (predict for NP_001328036.1)
chlo 5,  chlo_mito 3,  cyto 2,  plas 1,  extr 1,  vacu 1  (predict for NP_195059.3)
Subcellular
localization
TargetP
scret 7  (predict for NP_001154284.1)
other 6  (predict for NP_001328034.1)
other 8  (predict for NP_001328035.1)
other 6  (predict for NP_001328036.1)
scret 7  (predict for NP_195059.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PGSIP3

.
ath-r.7
for
PGSIP3

.
ath-m.9
for
PGSIP3

.
ath-e.2
for
PGSIP3

.
ath-m.4.bio
for
PGSIP3

.
ath-m.4.hor
for
PGSIP3

.
ath-m.4.lig
for
PGSIP3

.
ath-m.4.str
for
PGSIP3

.
ath-m.4.tis
for
PGSIP3

.
gma-u.5
for
100812365

.
gma-u.5
for
100795248

.
gma-u.5
for
100780684

.
vvi-u.5
for
100266116

.
ppo-u.5
for
18104898

.
mtr-u.5
for
11412568

.
mtr-u.5
for
112417484

.
sly-u.5
for
101260637

.
sly-u.5
for
101255391

.
osa-u.5
for
4331856

.
zma-u.5
for
100191941

.


Ortholog ID: 5563
Species ath gma gma sly sly osa zma bra bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot sot cit bdi nta
Symbol PGSIP3 LOC100812365 LOC100795248 LOC101260637 LOC101255391 LOC4331856 LOC100191941 LOC103834490 LOC103848105 LOC100266116 LOC18104898 LOC11412568 LOC112417484 LOC123098698 LOC123084685 LOC123449640 LOC107905562 LOC107910230 LOC106361102 LOC106402736 LOC8057657 LOC102593375 LOC102593702 LOC102618695 LOC100824260 LOC107800600
Function* plant glycogenin-like starch initiation protein 3 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2-like UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2-like UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00940 Phenylpropanoid biosynthesis 3
mtr00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00940 Phenylpropanoid biosynthesis 4
mtr00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00941 Flavonoid biosynthesis 2
tae00944 Flavone and flavonol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
ghi04142 Lysosome 4
ghi00380 Tryptophan metabolism 2
ghi00740 Riboflavin metabolism 2
ghi00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00940 Phenylpropanoid biosynthesis 2
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829469 100812365 100795248 101260637 101255391 4331856 100191941 103834490 103848105 100266116 18104898 11412568 112417484 123098698 123084685 123449640 107905562 107910230 106361102 106402736 8057657 102593375 102593702 102618695 100824260 107800600
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