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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   LTO1   NAD(P)H dehydrogenase (quinone)s 
 ath-r.7   LTO1   NAD(P)H dehydrogenase (quinone)s 
 ath-m.9   LTO1   NAD(P)H dehydrogenase (quinone)s 
 ath-e.2   LTO1   NAD(P)H dehydrogenase (quinone)s 
 ath-m.4.bio   LTO1   NAD(P)H dehydrogenase (quinone)s 
 ath-m.4.hor   LTO1   NAD(P)H dehydrogenase (quinone)s 
 ath-m.4.lig   LTO1   NAD(P)H dehydrogenase (quinone)s 
 ath-m.4.str   LTO1   NAD(P)H dehydrogenase (quinone)s 
 ath-m.4.tis   LTO1   NAD(P)H dehydrogenase (quinone)s 
 bra-r.6   103873899   thiol-disulfide oxidoreductase LTO1 
 bna-r.1   106359871   thiol-disulfide oxidoreductase LTO1 
 bna-r.1   106346686   thiol-disulfide oxidoreductase LTO1-like 
 bna-r.1   106351013   thiol-disulfide oxidoreductase LTO1-like 
 ghi-r.1   107937792   thiol-disulfide oxidoreductase LTO1 
 ghi-r.1   107917506   thiol-disulfide oxidoreductase LTO1 
 cit-r.1   102619441   thiol-disulfide oxidoreductase LTO1 
 gma-u.5   100817843   uncharacterized LOC100817843 
 vvi-u.5   100264333   thiol-disulfide oxidoreductase LTO1 
 ppo-u.5   18099120   thiol-disulfide oxidoreductase LTO1 
 mtr-u.5   11421116   thiol-disulfide oxidoreductase LTO1 
 sly-u.5   VKOR   vitamin K epoxide reductase 
 sot-r.1   102581146   thiol-disulfide oxidoreductase LTO1 
 nta-r.1   107776750   thiol-disulfide oxidoreductase LTO1 
 nta-r.1   107794467   thiol-disulfide oxidoreductase LTO1 
 osa-u.5   4331512   thiol-disulfide oxidoreductase LTO1 
 zma-u.5   100193951   Thiol-disulfide oxidoreductase LTO1 
 tae-r.2   123108305   thiol-disulfide oxidoreductase LTO1 
 tae-r.2   123098880   thiol-disulfide oxidoreductase LTO1 
 tae-r.2   123093609   thiol-disulfide oxidoreductase LTO1 
 hvu-r.1   123449770   thiol-disulfide oxidoreductase LTO1 
 sbi-r.1   8085679   thiol-disulfide oxidoreductase LTO1 
 bdi-r.1   100825344   thiol-disulfide oxidoreductase LTO1 
 cre-r.1   CHLRE_12g493150v5   uncharacterized protein 

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Top 50 coexpressed genes to LTO1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LTO1 (ath-u.5 coexpression data)

CoexMap"829729"


athLTO1 | Entrez gene ID : 829729      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010207 [list] [network] photosystem II assembly  (27 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  IDA  
GO MF
GO:0003955 [list] [network] NAD(P)H dehydrogenase (quinone) activity  (3 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001329911.1 [sequence] [blastp]
NP_567988.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  vacu 1,  nucl 1,  extr 1,  E.R._vacu 1  (predict for NP_001329911.1)
chlo 9,  mito 1,  extr 1  (predict for NP_567988.1)
Subcellular
localization
TargetP
chlo 7,  mito 3  (predict for NP_001329911.1)
chlo 7,  mito 3  (predict for NP_567988.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
LTO1
ath-r.7
for
LTO1
ath-m.9
for
LTO1
ath-e.2
for
LTO1
ath-m.4.bio
for
LTO1
ath-m.4.hor
for
LTO1
ath-m.4.lig
for
LTO1
ath-m.4.str
for
LTO1
ath-m.4.tis
for
LTO1
bra-r.6
for
103873899
bna-r.1
for
106359871
bna-r.1
for
106346686
bna-r.1
for
106351013
ghi-r.1
for
107937792
ghi-r.1
for
107917506
cit-r.1
for
102619441
gma-u.5
for
100817843
vvi-u.5
for
100264333
ppo-u.5
for
18099120
mtr-u.5
for
11421116
sly-u.5
for
VKOR
sot-r.1
for
102581146
nta-r.1
for
107776750
nta-r.1
for
107794467
osa-u.5
for
4331512
zma-u.5
for
100193951
tae-r.2
for
123108305
tae-r.2
for
123098880
tae-r.2
for
123093609
hvu-r.1
for
123449770
sbi-r.1
for
8085679
bdi-r.1
for
100825344
cre-r.1
for
CHLRE_12g493150v5


Ortholog ID: 9625
Species ath bra bna bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LTO1 LOC103873899 LOC106359871 LOC106351013 LOC106436613 LOC107937792 LOC107917506 LOC102619441 LOC100817843 LOC100264333 LOC18099120 LOC11421116 VKOR LOC102581146 LOC107776750 LOC107794467 LOC4331512 LOC100193951 LOC123108305 LOC123098880 LOC123093609 LOC123449770 LOC8085679 LOC100825344 CHLRE_12g493150v5
Function* NAD(P)H dehydrogenase (quinone)s thiol-disulfide oxidoreductase LTO1 thiol-disulfide oxidoreductase LTO1 thiol-disulfide oxidoreductase LTO1-like thiol-disulfide oxidoreductase LTO1 thiol-disulfide oxidoreductase LTO1 thiol-disulfide oxidoreductase LTO1 thiol-disulfide oxidoreductase LTO1 uncharacterized LOC100817843 thiol-disulfide oxidoreductase LTO1 thiol-disulfide oxidoreductase LTO1 thiol-disulfide oxidoreductase LTO1 vitamin K epoxide reductase thiol-disulfide oxidoreductase LTO1 thiol-disulfide oxidoreductase LTO1 thiol-disulfide oxidoreductase LTO1 thiol-disulfide oxidoreductase LTO1 Thiol-disulfide oxidoreductase LTO1 thiol-disulfide oxidoreductase LTO1 thiol-disulfide oxidoreductase LTO1 thiol-disulfide oxidoreductase LTO1 thiol-disulfide oxidoreductase LTO1 thiol-disulfide oxidoreductase LTO1 thiol-disulfide oxidoreductase LTO1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra01200 Carbon metabolism 2
bra04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00280 Valine, leucine and isoleucine degradation 2
bna03250 Viral life cycle - HIV-1 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00280 Valine, leucine and isoleucine degradation 11
bna00640 Propanoate metabolism 5
bna00785 Lipoic acid metabolism 4
bna01210 2-Oxocarboxylic acid metabolism 4
bna00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00280 Valine, leucine and isoleucine degradation 7
bna00640 Propanoate metabolism 4
bna00785 Lipoic acid metabolism 4
bna01210 2-Oxocarboxylic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 4
ppo00500 Starch and sucrose metabolism 2
ppo00520 Amino sugar and nucleotide sugar metabolism 2
ppo01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 2
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 2
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03060 Protein export 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829729 103873899 106359871 106351013 106436613 107937792 107917506 102619441 100817843 100264333 18099120 11421116 100037492 102581146 107776750 107794467 4331512 100193951 123108305 123098880 123093609 123449770 8085679 100825344 5726089
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