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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PBRP   plant-specific TFIIB-related protein 
 ath-r.7   PBRP   plant-specific TFIIB-related protein 
 ath-m.9   PBRP   plant-specific TFIIB-related protein 
 ath-e.2   PBRP   plant-specific TFIIB-related protein 
 ath-m.4.bio   PBRP   plant-specific TFIIB-related protein 
 ath-m.4.hor   PBRP   plant-specific TFIIB-related protein 
 ath-m.4.lig   PBRP   plant-specific TFIIB-related protein 
 ath-m.4.str   PBRP   plant-specific TFIIB-related protein 
 ath-m.4.tis   PBRP   plant-specific TFIIB-related protein 
 bra-r.6   103862482   plant-specific TFIIB-related protein 1 
 bna-r.1   106410760   plant-specific TFIIB-related protein 1 
 bna-r.1   BNAA03G53510D   plant-specific TFIIB-related protein 1 
 ghi-r.1   107913059   plant-specific TFIIB-related protein 1 
 ghi-r.1   107896268   plant-specific TFIIB-related protein 1 
 cit-r.1   102620952   hypothetical protein 
 gma-u.5   102662353   plant-specific TFIIB-related protein 1 
 gma-u.5   100815371   plant-specific TFIIB-related protein 1 
 vvi-u.5   100256546   plant-specific TFIIB-related protein 1 
 ppo-u.5   7473161   plant-specific TFIIB-related protein 1 
 mtr-u.5   11411099   plant-specific TFIIB-related protein 1 
 sly-u.5   101254048   transcription initiation factor IIB 
 sot-r.1   102599427   transcription initiation factor IIB 
 nta-r.1   107781075   plant-specific TFIIB-related protein 1 
 nta-r.1   107765888   plant-specific TFIIB-related protein 1 
 osa-u.5   4331943   plant-specific TFIIB-related protein 1 
 zma-u.5   542022   uncharacterized LOC542022 
 tae-r.2   123098395   plant-specific TFIIB-related protein 1 
 tae-r.2   123093125   plant-specific TFIIB-related protein 1 
 tae-r.2   123084951   plant-specific TFIIB-related protein 1 
 hvu-r.1   123449434   plant-specific TFIIB-related protein 1 
 sbi-r.1   8054252   plant-specific TFIIB-related protein 1 
 bdi-r.1   100835667   plant-specific TFIIB-related protein 1 

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Top 50 coexpressed genes to PBRP (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PBRP (ath-u.5 coexpression data)

CoexMap"829817"


athPBRP | Entrez gene ID : 829817      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03022 [list] [network] Basal transcription factors (55 genes)
GO BP
GO CC
GO:0009527 [list] [network] plastid outer membrane  (53 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0000182 [list] [network] rDNA binding  (2 genes)  IDA  
Protein NP_001078502.4 [sequence] [blastp]
NP_195383.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto_nucl 4,  chlo 2,  chlo_mito 1  (predict for NP_001078502.4)
nucl 5,  chlo 4,  cyto_nucl 3,  chlo_mito 2  (predict for NP_195383.1)
Subcellular
localization
TargetP
mito 5,  chlo 4  (predict for NP_001078502.4)
mito 5,  chlo 4  (predict for NP_195383.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PBRP
ath-r.7
for
PBRP
ath-m.9
for
PBRP
ath-e.2
for
PBRP
ath-m.4.bio
for
PBRP
ath-m.4.hor
for
PBRP
ath-m.4.lig
for
PBRP
ath-m.4.str
for
PBRP
ath-m.4.tis
for
PBRP
bra-r.6
for
103862482
bna-r.1
for
106410760
bna-r.1
for
BNAA03G53510D
ghi-r.1
for
107913059
ghi-r.1
for
107896268
cit-r.1
for
102620952
gma-u.5
for
102662353
gma-u.5
for
100815371
vvi-u.5
for
100256546
ppo-u.5
for
7473161
mtr-u.5
for
11411099
sly-u.5
for
101254048
sot-r.1
for
102599427
nta-r.1
for
107781075
nta-r.1
for
107765888
osa-u.5
for
4331943
zma-u.5
for
542022
tae-r.2
for
123098395
tae-r.2
for
123093125
tae-r.2
for
123084951
hvu-r.1
for
123449434
sbi-r.1
for
8054252
bdi-r.1
for
100835667


Ortholog ID: 10905
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol PBRP LOC103862482 LOC106410760 BNAA03G53510D LOC107913059 LOC107896268 LOC102620952 LOC102662353 LOC100815371 LOC100256546 LOC7473161 LOC11411099 LOC101254048 LOC102599427 LOC107781075 LOC107765888 LOC4331943 LOC542022 LOC123098395 LOC123093125 LOC123084951 LOC123449434 LOC8054252 LOC100835667
Function* plant-specific TFIIB-related protein plant-specific TFIIB-related protein 1 plant-specific TFIIB-related protein 1 plant-specific TFIIB-related protein 1 plant-specific TFIIB-related protein 1 plant-specific TFIIB-related protein 1 hypothetical protein plant-specific TFIIB-related protein 1 plant-specific TFIIB-related protein 1 plant-specific TFIIB-related protein 1 plant-specific TFIIB-related protein 1 plant-specific TFIIB-related protein 1 transcription initiation factor IIB transcription initiation factor IIB plant-specific TFIIB-related protein 1 plant-specific TFIIB-related protein 1 plant-specific TFIIB-related protein 1 uncharacterized LOC542022 plant-specific TFIIB-related protein 1 plant-specific TFIIB-related protein 1 plant-specific TFIIB-related protein 1 plant-specific TFIIB-related protein 1 plant-specific TFIIB-related protein 1 plant-specific TFIIB-related protein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 3
ath03250 Viral life cycle - HIV-1 2
ath03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 2
ppo01230 Biosynthesis of amino acids 2
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03420 Nucleotide excision repair 2
sly03013 Nucleocytoplasmic transport 2
sly03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 2
zma03082 ATP-dependent chromatin remodeling 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 3
hvu04712 Circadian rhythm - plant 2
hvu00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829817 103862482 106410760 106451971 107913059 107896268 102620952 102662353 100815371 100256546 7473161 11411099 101254048 102599427 107781075 107765888 4331943 542022 123098395 123093125 123084951 123449434 8054252 100835667
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