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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RGTB1   RAB geranylgeranyl transferase beta subunit 1 
 ath-r.7   RGTB1   RAB geranylgeranyl transferase beta subunit 1 
 ath-m.9   RGTB1   RAB geranylgeranyl transferase beta subunit 1 
 ath-e.2   RGTB1   RAB geranylgeranyl transferase beta subunit 1 
 ath-m.4.bio   RGTB1   RAB geranylgeranyl transferase beta subunit 1 
 ath-m.4.hor   RGTB1   RAB geranylgeranyl transferase beta subunit 1 
 ath-m.4.lig   RGTB1   RAB geranylgeranyl transferase beta subunit 1 
 ath-m.4.str   RGTB1   RAB geranylgeranyl transferase beta subunit 1 
 ath-m.4.tis   RGTB1   RAB geranylgeranyl transferase beta subunit 1 
 bra-r.6   103846658   geranylgeranyl transferase type-2 subunit beta 1 
 bna-r.1   106424626   geranylgeranyl transferase type-2 subunit beta 1 
 bna-r.1   106372356   geranylgeranyl transferase type-2 subunit beta 1 
 ghi-r.1   107886840   geranylgeranyl transferase type-2 subunit beta 1 
 ghi-r.1   107886914   geranylgeranyl transferase type-2 subunit beta 1 
 cit-r.1   102626852   geranylgeranyl transferase type-2 subunit beta 1 
 gma-u.5   100793642   geranylgeranyl transferase type-2 subunit beta-like 
 gma-u.5   100777273   geranylgeranyl transferase type-2 subunit beta 1 
 vvi-u.5   100253446   geranylgeranyl transferase type-2 subunit beta 1 
 vvi-u.5   100255737   geranylgeranyl transferase type-2 subunit beta 1 
 ppo-u.5   7481716   geranylgeranyl transferase type-2 subunit beta 1 
 mtr-u.5   25485517   geranylgeranyl transferase type-2 subunit beta 1 
 mtr-u.5   112417483   geranylgeranyl transferase type-2 subunit beta 1 
 sly-u.5   101247700   geranylgeranyl transferase type-2 subunit beta 1 
 sly-u.5   101247306   geranylgeranyl transferase type-2 subunit beta 1-like 
 sot-r.1   102597314   geranylgeranyl transferase type-2 subunit beta-like 
 sot-r.1   102591180   geranylgeranyl transferase type-2 subunit beta 
 nta-r.1   107816265   geranylgeranyl transferase type-2 subunit beta 1 
 nta-r.1   107792959   geranylgeranyl transferase type-2 subunit beta 1 
 nta-r.1   107818131   geranylgeranyl transferase type-2 subunit beta 1 
 osa-u.5   4346013   geranylgeranyl transferase type-2 subunit beta 1 
 zma-u.5   100193289   uncharacterized LOC100193289 
 tae-r.2   123151282   geranylgeranyl transferase type-2 subunit beta 1 
 tae-r.2   123160925   geranylgeranyl transferase type-2 subunit beta 1 
 tae-r.2   123168368   geranylgeranyl transferase type-2 subunit beta 1 
 hvu-r.1   123410584   geranylgeranyl transferase type-2 subunit beta 1 
 sbi-r.1   8055164   geranylgeranyl transferase type-2 subunit beta 1 
 bdi-r.1   100825124   geranylgeranyl transferase type-2 subunit beta 1 
 cre-r.1   CHLRE_01g053500v5   uncharacterized protein 

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Top 50 coexpressed genes to RGTB1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RGTB1 (ath-u.5 coexpression data)

CoexMap"831094"


athRGTB1 | Entrez gene ID : 831094      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 2 1 2 2 2 3 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0018344 [list] [network] protein geranylgeranylation  (5 genes)  IDA  
GO:0140301 [list] [network] pollen-stigma interaction  (6 genes)  IMP  
GO:0010315 [list] [network] auxin export across the plasma membrane  (15 genes)  IMP  
GO:0140964 [list] [network] intracellular auxin homeostasis  (19 genes)  IMP  
GO:0009960 [list] [network] endosperm development  (35 genes)  IMP  
GO:0010183 [list] [network] pollen tube guidance  (50 genes)  IMP  
GO:0010214 [list] [network] seed coat development  (51 genes)  IMP  
GO:0009553 [list] [network] embryo sac development  (161 genes)  IMP  
GO:0009555 [list] [network] pollen development  (385 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP  
GO:0048364 [list] [network] root development  (600 genes)  IMP  
GO:0048316 [list] [network] seed development  (775 genes)  IMP  
GO CC
GO:0005968 [list] [network] Rab-protein geranylgeranyltransferase complex  (4 genes)  IDA  
GO MF
GO:0004663 [list] [network] Rab geranylgeranyltransferase activity  (5 genes)  IDA IEA  
Protein NP_568259.1 [sequence] [blastp]
NP_974770.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 3,  nucl 1,  chlo_mito 1  (predict for NP_568259.1)
cyto 5,  chlo 3,  nucl 1,  chlo_mito 1  (predict for NP_974770.1)
Subcellular
localization
TargetP
other 5  (predict for NP_568259.1)
other 5,  scret 3  (predict for NP_974770.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
RGTB1
ath-r.7
for
RGTB1
ath-m.9
for
RGTB1
ath-e.2
for
RGTB1
ath-m.4.bio
for
RGTB1
ath-m.4.hor
for
RGTB1
ath-m.4.lig
for
RGTB1
ath-m.4.str
for
RGTB1
ath-m.4.tis
for
RGTB1
bra-r.6
for
103846658
bna-r.1
for
106424626
bna-r.1
for
106372356
ghi-r.1
for
107886840
ghi-r.1
for
107886914
cit-r.1
for
102626852
gma-u.5
for
100793642
gma-u.5
for
100777273
vvi-u.5
for
100253446
vvi-u.5
for
100255737
ppo-u.5
for
7481716
mtr-u.5
for
25485517
mtr-u.5
for
112417483
sly-u.5
for
101247700
sly-u.5
for
101247306
sot-r.1
for
102597314
sot-r.1
for
102591180
nta-r.1
for
107816265
nta-r.1
for
107792959
nta-r.1
for
107818131
osa-u.5
for
4346013
zma-u.5
for
100193289
tae-r.2
for
123151282
tae-r.2
for
123160925
tae-r.2
for
123168368
hvu-r.1
for
123410584
sbi-r.1
for
8055164
bdi-r.1
for
100825124
cre-r.1
for
CHLRE_01g053500v5


Ortholog ID: 6550
Species ath bra bna bna ghi ghi cit gma gma vvi vvi ppo mtr mtr sly sly sot sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol RGTB1 LOC103846658 LOC106424626 LOC106372356 LOC107886840 LOC107886914 LOC102626852 LOC100793642 LOC100777273 LOC100253446 LOC100255737 LOC7481716 LOC25485517 LOC112417483 LOC101247700 LOC101247306 LOC102597314 LOC102591180 LOC107816265 LOC107792959 LOC107818131 LOC4346013 LOC100193289 LOC123151282 LOC123160925 LOC123168368 LOC123410584 LOC8055164 LOC100825124 CHLRE_01g053500v5
Function* RAB geranylgeranyl transferase beta subunit 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta-like geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1-like geranylgeranyl transferase type-2 subunit beta-like geranylgeranyl transferase type-2 subunit beta geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 uncharacterized LOC100193289 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 3
ath00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04814 Motor proteins 4
ghi04016 MAPK signaling pathway - plant 2
ghi00541 Biosynthesis of various nucleotide sugars 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04814 Motor proteins 4
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 6
mtr03018 RNA degradation 2
mtr03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00564 Glycerophospholipid metabolism 2
sly00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00260 Glycine, serine and threonine metabolism 3
sot00470 D-Amino acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00260 Glycine, serine and threonine metabolism 3
sot00470 D-Amino acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta04136 Autophagy - other 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00510 N-Glycan biosynthesis 3
hvu00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00510 N-Glycan biosynthesis 3
bdi04144 Endocytosis 2
bdi00513 Various types of N-glycan biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831094 103846658 106424626 106372356 107886840 107886914 102626852 100793642 100777273 100253446 100255737 7481716 25485517 112417483 101247700 101247306 102597314 102591180 107816265 107792959 107818131 4346013 100193289 123151282 123160925 123168368 123410584 8055164 100825124 5715794
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