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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CSD3   copper/zinc superoxide dismutase 3 
 ath-r.7   CSD3   copper/zinc superoxide dismutase 3 
 ath-m.9   CSD3   copper/zinc superoxide dismutase 3 
 ath-e.2   CSD3   copper/zinc superoxide dismutase 3 
 ath-m.4.bio   CSD3   copper/zinc superoxide dismutase 3 
 ath-m.4.hor   CSD3   copper/zinc superoxide dismutase 3 
 ath-m.4.lig   CSD3   copper/zinc superoxide dismutase 3 
 ath-m.4.str   CSD3   copper/zinc superoxide dismutase 3 
 ath-m.4.tis   CSD3   copper/zinc superoxide dismutase 3 
 gma-u.5   100780008   superoxide dismutase [Cu-Zn] 2-like 
 vvi-u.5   100260705   superoxide dismutase [Cu-Zn] 2 
 ppo-u.5   7491043   superoxide dismutase [Cu-Zn] 2 
 ppo-u.5   7474659   superoxide dismutase [Cu-Zn] 2 
 mtr-u.5   11417511   superoxide dismutase [Cu-Zn] 2 
 sly-u.5   101264296   superoxide dismutase [Cu-Zn] 2 
 osa-u.5   4332082   superoxide dismutase [Cu-Zn] 2 
 zma-u.5   100282741   superoxide dismutase 2 

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Top 50 coexpressed genes to CSD3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CSD3 (ath-u.5 coexpression data)

CoexMap"831928"


athCSD3 | Entrez gene ID : 831928      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 9 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04146 [list] [network] Peroxisome (90 genes)
GO BP
GO:0071457 [list] [network] cellular response to ozone  (3 genes)  IEP  
GO:0071486 [list] [network] cellular response to high light intensity  (6 genes)  IEP  
GO:0019430 [list] [network] removal of superoxide radicals  (7 genes)  IC  
GO:0071493 [list] [network] cellular response to UV-B  (7 genes)  IEP  
GO:0071484 [list] [network] cellular response to light intensity  (13 genes)  IEP  
GO:0071472 [list] [network] cellular response to salt stress  (42 genes)  IEP  
GO:0006979 [list] [network] response to oxidative stress  (384 genes)  IEP TAS  
GO CC
GO:0005777 [list] [network] peroxisome  (313 genes)  HDA NAS  
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0004784 [list] [network] superoxide dismutase activity  (10 genes)  ISS  
Protein NP_001119245.1 [sequence] [blastp]
NP_197311.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 1,  mito 1,  cysk 1,  chlo 1,  pero 1,  golg 1,  cyto_mito 1,  cysk_plas 1,  mito_plas 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001119245.1)
nucl 6,  cyto 1,  pero 1,  cyto_pero 1  (predict for NP_197311.1)
Subcellular
localization
TargetP
other 4,  mito 3  (predict for NP_001119245.1)
other 4,  mito 3  (predict for NP_197311.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CSD3

.
ath-r.7
for
CSD3

.
ath-m.9
for
CSD3

.
ath-e.2
for
CSD3

.
ath-m.4.bio
for
CSD3

.
ath-m.4.hor
for
CSD3

.
ath-m.4.lig
for
CSD3

.
ath-m.4.str
for
CSD3

.
ath-m.4.tis
for
CSD3

.
gma-u.5
for
100780008

.
vvi-u.5
for
100260705

.
ppo-u.5
for
7491043

.
ppo-u.5
for
7474659

.
mtr-u.5
for
11417511

.
sly-u.5
for
101264296

.
osa-u.5
for
4332082

.
zma-u.5
for
100282741

.


Ortholog ID: 11738
Species ath gma sly osa zma vvi ppo ppo mtr tae tae hvu ghi ghi bna sbi sot cit bdi nta nta
Symbol CSD3 LOC100780008 LOC101264296 LOC4332082 LOC100282741 LOC100260705 LOC7474659 LOC7491043 LOC11417511 LOC123085154 LOC123098219 LOC123449293 LOC107891526 LOC107935219 LOC106426158 LOC8056878 LOC102604743 LOC102624030 LOC100828127 LOC107826236 LOC107763090
Function* copper/zinc superoxide dismutase 3 superoxide dismutase [Cu-Zn] 2-like superoxide dismutase [Cu-Zn] 2 superoxide dismutase [Cu-Zn] 2 superoxide dismutase 2 superoxide dismutase [Cu-Zn] 2 superoxide dismutase [Cu-Zn] 2 superoxide dismutase [Cu-Zn] 2 superoxide dismutase [Cu-Zn] 2 superoxide dismutase [Cu-Zn] 2 superoxide dismutase [Cu-Zn] 2 superoxide dismutase [Cu-Zn] 2-like superoxide dismutase [Cu-Zn] 2 superoxide dismutase [Cu-Zn] 2 superoxide dismutase [Cu-Zn] 3 superoxide dismutase [Cu-Zn] 2 superoxide dismutase [Cu-Zn] 2 superoxide dismutase [Cu-Zn] 2 superoxide dismutase [Cu-Zn] 2 superoxide dismutase [Cu-Zn] 2 superoxide dismutase [Cu-Zn] 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04146 Peroxisome 4
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00760 Nicotinate and nicotinamide metabolism 2
zma01240 Biosynthesis of cofactors 2
zma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00230 Purine metabolism 3
ppo01200 Carbon metabolism 3
ppo01232 Nucleotide metabolism 2
ppo03010 Ribosome 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03420 Nucleotide excision repair 5
mtr03020 RNA polymerase 4
mtr03040 Spliceosome 3
mtr03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 3
tae04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 3
tae04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
ghi04146 Peroxisome 2
ghi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00053 Ascorbate and aldarate metabolism 4
bna00480 Glutathione metabolism 4
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 3
bdi01230 Biosynthesis of amino acids 3
bdi00710 Carbon fixation by Calvin cycle 2
bdi00260 Glycine, serine and threonine metabolism 2
bdi00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831928 100780008 101264296 4332082 100282741 100260705 7474659 7491043 11417511 123085154 123098219 123449293 107891526 107935219 106426158 8056878 102604743 102624030 100828127 107826236 107763090
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