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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   DCL4   dicer-like 4 
 ath-r.7   DCL4   dicer-like 4 
 ath-m.9   DCL4   dicer-like 4 
 ath-e.2   DCL4   dicer-like 4 
 ath-m.4.bio   DCL4   dicer-like 4 
 ath-m.4.hor   DCL4   dicer-like 4 
 ath-m.4.lig   DCL4   dicer-like 4 
 ath-m.4.str   DCL4   dicer-like 4 
 ath-m.4.tis   DCL4   dicer-like 4 
 ath-u.5   DCL2   dicer-like 2 
 ath-u.5   DCL3   dicer-like 3 
 ath-u.5   DCL1   dicer-like 1 
 gma-u.5   100816164   endoribonuclease Dicer homolog 2 
 gma-u.5   100814732   endoribonuclease Dicer homolog 3a 
 gma-u.5   100811631   endoribonuclease Dicer homolog 1 
 vvi-u.5   100258190   endoribonuclease Dicer homolog 2 
 vvi-u.5   100243116   dicer-like protein 4 
 vvi-u.5   100264308   endoribonuclease Dicer homolog 1 
 ppo-u.5   7463776   endoribonuclease Dicer homolog 3 
 ppo-u.5   7474402   endoribonuclease Dicer homolog 2 
 ppo-u.5   7479544   dicer-like protein 4 
 mtr-u.5   25501509   endoribonuclease Dicer homolog 2 
 mtr-u.5   25493973   dicer-like protein 4 
 mtr-u.5   25483869   endoribonuclease Dicer homolog 2 
 sly-u.5   DCL3   endoribonuclease Dicer homolog 3a 
 sly-u.5   DCL1   endoribonuclease Dicer homolog 1 
 sly-u.5   DCL2b   endoribonuclease Dicer 2b 
 osa-u.5   107282071   endoribonuclease Dicer homolog 3a-like 
 osa-u.5   4348944   endoribonuclease Dicer homolog 3b 
 zma-u.5   100381550   uncharacterized LOC100381550 
 zma-u.5   100192986   dicer-like 105 
 zma-u.5   103626078   endoribonuclease Dicer homolog 2a 

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Top 50 coexpressed genes to DCL4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to DCL4 (ath-u.5 coexpression data)

CoexMap"832154"


athDCL4 | Entrez gene ID : 832154      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 12 3 3 3 3 3 2 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010599 [list] [network] lsiRNA processing  (3 genes)  IMP  
GO:0051214 [list] [network] RNAi-mediated antiviral immunity against RNA virus  (3 genes)  IGI  
GO:0006353 [list] [network] DNA-templated transcription termination  (6 genes)  IMP  
GO:0010050 [list] [network] vegetative phase change  (10 genes)  IMP  
GO:0044027 [list] [network] negative regulation of gene expression via chromosomal CpG island methylation  (11 genes)  IMP  
GO:0009616 [list] [network] RNAi-mediated antiviral immune response  (13 genes)  IGI  
GO:0010267 [list] [network] ta-siRNA processing  (15 genes)  IMP  
GO:0035196 [list] [network] miRNA processing  (30 genes)  IGI  
GO:0051607 [list] [network] defense response to virus  (55 genes)  IGI IMP  
GO CC
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001190348.1 [sequence] [blastp]
NP_001330078.1 [sequence] [blastp]
NP_197532.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_001190348.1)
cyto 4,  chlo 2,  cyto_pero 2,  cyto_E.R. 2  (predict for NP_001330078.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_197532.3)
Subcellular
localization
TargetP
other 9  (predict for NP_001190348.1)
scret 7,  other 3  (predict for NP_001330078.1)
other 9  (predict for NP_197532.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
DCL4
ath-r.7
for
DCL4
ath-m.9
for
DCL4
ath-e.2
for
DCL4
ath-m.4.bio
for
DCL4
ath-m.4.hor
for
DCL4
ath-m.4.lig
for
DCL4
ath-m.4.str
for
DCL4
ath-m.4.tis
for
DCL4
ath-u.5
for
DCL2
ath-u.5
for
DCL3
ath-u.5
for
DCL1
gma-u.5
for
100816164
gma-u.5
for
100814732
gma-u.5
for
100811631
vvi-u.5
for
100258190
vvi-u.5
for
100243116
vvi-u.5
for
100264308
ppo-u.5
for
7463776
ppo-u.5
for
7474402
ppo-u.5
for
7479544
mtr-u.5
for
25501509
mtr-u.5
for
25493973
mtr-u.5
for
25483869
sly-u.5
for
DCL3
sly-u.5
for
DCL1
sly-u.5
for
DCL2b
osa-u.5
for
107282071
osa-u.5
for
4348944
zma-u.5
for
100381550
zma-u.5
for
100192986
zma-u.5
for
103626078


Ortholog ID: 537
Species ath ath bra bra bna bna ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre cre
Symbol DCL2 DCL1 LOC103844613 LOC103855153 LOC106355731 LOC106439495 LOC107943956 LOC107961631 LOC102629634 LOC102617691 LOC100818702 LOC100796706 LOC100254311 LOC100264308 LOC18096402 LOC7463776 LOC11431448 LOC11436582 DCL2b DCL3 LOC102597432 LOC102601788 LOC107829523 LOC107824932 LOC4324864 LOC4348944 LOC103643440 LOC103626078 LOC123093773 LOC123080209 LOC123449883 LOC123431733 LOC8064552 LOC8064553 LOC100836134 LOC100824131 CHLRE_02g141000v5 CHLRE_07g345900v5
Function* dicer-like 2 dicer-like 1 endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 2 endoribonuclease Dicer homolog 3 dicer-like protein 4 endoribonuclease Dicer homolog 2 endoribonuclease Dicer homolog 3a endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 2 dicer-like protein 4 endoribonuclease Dicer homolog 2 endoribonuclease Dicer homolog 3a endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 3 endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 3a endoribonuclease Dicer 2b endoribonuclease Dicer homolog 3a endoribonuclease Dicer homolog 1 dicer-like protein 4 endoribonuclease Dicer homolog 3a endoribonuclease Dicer homolog 3a-like endoribonuclease Dicer homolog 3a-like endoribonuclease Dicer homolog 3b endoribonuclease Dicer homolog 3b endoribonuclease Dicer homolog 2a endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 3a endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 3b-like endoribonuclease Dicer homolog 2a endoribonuclease Dicer homolog 2a endoribonuclease Dicer homolog 3a endoribonuclease Dicer homolog 2a uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03440 Homologous recombination 2
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03082 ATP-dependent chromatin remodeling 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 3
ghi04518 Integrin signaling 3
ghi04142 Lysosome 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 9
cit03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma04141 Protein processing in endoplasmic reticulum 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma04141 Protein processing in endoplasmic reticulum 3
gma04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00310 Lysine degradation 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
ppo03082 ATP-dependent chromatin remodeling 2
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa04141 Protein processing in endoplasmic reticulum 3
osa00510 N-Glycan biosynthesis 2
osa00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 6
tae03040 Spliceosome 6
tae00310 Lysine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 3
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03015 mRNA surveillance pathway 2
bdi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi02010 ABC transporters 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821300 839574 103844613 103855153 106355731 106439495 107943956 107961631 102629634 102617691 100818702 100796706 100254311 100264308 18096402 7463776 11431448 11436582 101256737 101265460 102597432 102601788 107829523 107824932 4324864 4348944 103643440 103626078 123093773 123080209 123449883 123431733 8064552 8064553 100836134 100824131 5720424 5718140
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