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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RFC1   replication factor C1 
 ath-r.7   RFC1   replication factor C1 
 ath-e.2   RFC1   replication factor C1 
 gma-u.5   100802809   replication factor C subunit 1 
 gma-u.5   100790070   replication factor C subunit 1 
 vvi-u.5   100249625   replication factor C subunit 1 
 ppo-u.5   7486662   replication factor C subunit 1 
 mtr-u.5   25492173   replication factor C subunit 1 
 sly-u.5   101249468   replication factor C subunit 1 
 osa-u.5   4350754   replication factor C subunit 1-like 
 zma-u.5   103648088   replication factor C subunit 1 

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Top 50 coexpressed genes to RFC1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RFC1 (ath-u.5 coexpression data)

CoexMap"832261"


athRFC1 | Entrez gene ID : 832261      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03030 [list] [network] DNA replication (43 genes)
ath03410 [list] [network] Base excision repair (50 genes)
ath03420 [list] [network] Nucleotide excision repair (85 genes)
ath03430 [list] [network] Mismatch repair (32 genes)
GO BP
GO:0000712 [list] [network] resolution of meiotic recombination intermediates  (6 genes)  IMP  
GO:0051321 [list] [network] meiotic cell cycle  (135 genes)  IMP  
GO:0040029 [list] [network] epigenetic regulation of gene expression  (174 genes)  IMP  
GO:0006281 [list] [network] DNA repair  (203 genes)  IEA  
GO:0006974 [list] [network] DNA damage response  (246 genes)  IMP  
GO:0022414 [list] [network] reproductive process  (1746 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001330213.1 [sequence] [blastp]
NP_680188.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for NP_001330213.1)
nucl 9,  cyto 1,  cysk 1  (predict for NP_680188.1)
Subcellular
localization
TargetP
other 5,  chlo 3  (predict for NP_001330213.1)
other 5,  chlo 3  (predict for NP_680188.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
RFC1
ath-r.7
for
RFC1
ath-e.2
for
RFC1
gma-u.5
for
100802809
gma-u.5
for
100790070
vvi-u.5
for
100249625
ppo-u.5
for
7486662
mtr-u.5
for
25492173
sly-u.5
for
101249468
osa-u.5
for
4350754
zma-u.5
for
103648088


Ortholog ID: 10318
Species ath bra bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi sbi bdi cre
Symbol RFC1 LOC103851417 LOC106427329 LOC107927582 LOC121216233 LOC102623585 LOC100790070 LOC100802809 LOC100249625 LOC7486662 LOC25492173 LOC101249468 LOC102604147 LOC107761191 LOC107763539 LOC4350754 LOC103648088 LOC123148292 LOC123170123 LOC123412767 LOC8071946 LOC8054977 LOC100841258 CHLRE_12g521200v5
Function* replication factor C1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1-like replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03015 mRNA surveillance pathway 2
bna04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03410 Base excision repair 2
cit03015 mRNA surveillance pathway 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00310 Lysine degradation 2
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 5
ppo03040 Spliceosome 5
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr03013 Nucleocytoplasmic transport 3
mtr03015 mRNA surveillance pathway 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 7
osa03083 Polycomb repressive complex 2
osa03040 Spliceosome 2
osa03030 DNA replication 2
osa03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03410 Base excision repair 2
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03083 Polycomb repressive complex 3
sbi03013 Nucleocytoplasmic transport 2
sbi03040 Spliceosome 2
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03420 Nucleotide excision repair 3
sbi03040 Spliceosome 2
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 4
cre03410 Base excision repair 3
cre03420 Nucleotide excision repair 2
cre03430 Mismatch repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832261 103851417 106427329 107927582 121216233 102623585 100790070 100802809 100249625 7486662 25492173 101249468 102604147 107761191 107763539 4350754 103648088 123148292 123170123 123412767 8071946 8054977 100841258 5722576
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