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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SIGE   sigma factor E 
 ath-r.7   SIGE   sigma factor E 
 ath-m.9   SIGE   sigma factor E 
 ath-e.2   SIGE   sigma factor E 
 ath-m.4.bio   SIGE   sigma factor E 
 ath-m.4.hor   SIGE   sigma factor E 
 ath-m.4.lig   SIGE   sigma factor E 
 ath-m.4.str   SIGE   sigma factor E 
 ath-m.4.tis   SIGE   sigma factor E 
 gma-u.5   SIG5B   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like 
 gma-u.5   100811515   RNA polymerase sigma factor rpoD-like 
 gma-u.5   100796580   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 
 vvi-u.5   100250120   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 
 ppo-u.5   18103620   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 
 ppo-u.5   18105512   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 
 mtr-u.5   11428191   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 
 sly-u.5   101252660   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 
 osa-u.5   4339759   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 
 zma-u.5   103630810   RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 

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Top 50 coexpressed genes to SIGE (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SIGE (ath-u.5 coexpression data)

CoexMap"832477"


athSIGE | Entrez gene ID : 832477      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 9 3 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010207 [list] [network] photosystem II assembly  (27 genes)  IMP  
GO:0071483 [list] [network] cellular response to blue light  (28 genes)  IEP  
GO:0006352 [list] [network] DNA-templated transcription initiation  (35 genes)  ISS TAS  
GO:0071472 [list] [network] cellular response to salt stress  (42 genes)  IMP  
GO:0010218 [list] [network] response to far red light  (57 genes)  IEP  
GO:0010114 [list] [network] response to red light  (73 genes)  IEP  
GO:0009637 [list] [network] response to blue light  (94 genes)  IGI  
GO:0009553 [list] [network] embryo sac development  (161 genes)  IMP  
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IMP  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (262 genes)  IMP  
GO:2001141 [list] [network] regulation of RNA biosynthetic process  (1621 genes)  IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM ISS  
GO MF
GO:0016987 [list] [network] sigma factor activity  (6 genes)  IMP ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001330408.1 [sequence] [blastp]
NP_001330409.1 [sequence] [blastp]
NP_197800.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 4  (predict for NP_001330408.1)
cyto 5,  chlo 4  (predict for NP_001330409.1)
cyto 5,  chlo 4  (predict for NP_197800.1)
Subcellular
localization
TargetP
chlo 4  (predict for NP_001330408.1)
chlo 4  (predict for NP_001330409.1)
chlo 4  (predict for NP_197800.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SIGE

.
ath-r.7
for
SIGE

.
ath-m.9
for
SIGE

.
ath-e.2
for
SIGE

.
ath-m.4.bio
for
SIGE

.
ath-m.4.hor
for
SIGE

.
ath-m.4.lig
for
SIGE

.
ath-m.4.str
for
SIGE

.
ath-m.4.tis
for
SIGE

.
gma-u.5
for
SIG5B

.
gma-u.5
for
100811515

.
gma-u.5
for
100796580

.
vvi-u.5
for
100250120

.
ppo-u.5
for
18103620

.
ppo-u.5
for
18105512

.
mtr-u.5
for
11428191

.
sly-u.5
for
101252660

.
osa-u.5
for
4339759

.
zma-u.5
for
103630810

.


Ortholog ID: 7735
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol SIGE SIG5B LOC100796580 LOC101252660 LOC4339759 LOC103630810 LOC103865831 LOC103874286 LOC100250120 LOC18103620 LOC18105512 LOC11428191 LOC123070039 LOC123148959 LOC123452201 LOC107929486 LOC107947260 LOC106428449 LOC106366017 LOC8066537 LOC102586954 LOC102609535 LOC100821196 LOC107795222 LOC107829846
Function* sigma factor E RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 2
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00010 Glycolysis / Gluconeogenesis 2
gma00030 Pentose phosphate pathway 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 2
mtr04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 3
bna00900 Terpenoid backbone biosynthesis 2
bna00561 Glycerolipid metabolism 2
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 3
bna00900 Terpenoid backbone biosynthesis 2
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00999 Biosynthesis of various plant secondary metabolites 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00860 Porphyrin metabolism 2
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832477 100812580 100796580 101252660 4339759 103630810 103865831 103874286 100250120 18103620 18105512 11428191 123070039 123148959 123452201 107929486 107947260 106428449 106366017 8066537 102586954 102609535 100821196 107795222 107829846
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