Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   HDA7   histone deacetylase7 
 ath-m.4.bio   HDA7   histone deacetylase7 
 ath-m.4.hor   HDA7   histone deacetylase7 
 ath-m.4.lig   HDA7   histone deacetylase7 
 ath-m.4.str   HDA7   histone deacetylase7 
 ath-m.4.tis   HDA7   histone deacetylase7 
 ath-u.5   HDA6   histone deacetylase 6 
 gma-u.5   HDA16   histone deacetylase 
 gma-u.5   HDA7   histone deacetylase 
 gma-u.5   HDA3   histone deacetylase 
 vvi-u.5   100244903   histone deacetylase 6 
 ppo-u.5   7456903   histone deacetylase 6 
 ppo-u.5   7453794   histone deacetylase 6 
 mtr-u.5   11414050   histone deacetylase 6 
 sly-u.5   HDA3   histone deacetylase 
 sly-u.5   101256864   histone deacetylase 6-like 
 osa-u.5   4345332   histone deacetylase 6 
 zma-u.5   HDA108   histone deacetylase 108 

close


Top 50 coexpressed genes to HDA7 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to HDA7 (ath-m.9 coexpression data)

CoexMap"833525"


athHDA7 | Entrez gene ID : 833525      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 7 3 1 2 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03082 [list] [network] ATP-dependent chromatin remodeling (64 genes)
ath03083 [list] [network] Polycomb repressive complex (65 genes)
GO BP
GO:0009845 [list] [network] seed germination  (111 genes)  IMP  
GO:0009553 [list] [network] embryo sac development  (161 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0004407 [list] [network] histone deacetylase activity  (17 genes)  ISS  
GO:0008270 [list] [network] zinc ion binding  (391 genes)  ISS  
Protein NP_198410.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  pero 2,  mito 1  (predict for NP_198410.1)
Subcellular
localization
TargetP
other 7,  mito 5  (predict for NP_198410.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
HDA7

.
ath-m.4.bio
for
HDA7

.
ath-m.4.hor
for
HDA7

.
ath-m.4.lig
for
HDA7

.
ath-m.4.str
for
HDA7

.
ath-m.4.tis
for
HDA7

.
ath-u.5
for
HDA6

.
gma-u.5
for
HDA16

.
gma-u.5
for
HDA7

.
gma-u.5
for
HDA3

.
vvi-u.5
for
100244903

.
ppo-u.5
for
7456903

.
ppo-u.5
for
7453794

.
mtr-u.5
for
11414050

.
sly-u.5
for
HDA3

.
sly-u.5
for
101256864

.
osa-u.5
for
4345332

.
zma-u.5
for
HDA108

.


Ortholog ID: 6361
Species ath gma gma sly sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot sot cit bdi nta nta
Symbol HDA6 HDA16 HDA3 HDA3 LOC101256864 LOC4345332 HDA108 LOC103837453 LOC103873731 LOC100244903 LOC7453794 LOC7456903 LOC11414050 LOC123144362 LOC123136940 LOC123402944 LOC107949697 LOC107886255 LOC106422589 LOC106347870 LOC8073075 LOC102587267 LOC102605718 LOC102617679 LOC100834631 LOC107828384 LOC107830951
Function* histone deacetylase 6 histone deacetylase histone deacetylase histone deacetylase histone deacetylase 6-like histone deacetylase 6 histone deacetylase 108 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6-like histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6-like histone deacetylase 6
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03082 ATP-dependent chromatin remodeling 2
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 4
gma03018 RNA degradation 3
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 4
gma03082 ATP-dependent chromatin remodeling 3
gma03083 Polycomb repressive complex 3
gma04075 Plant hormone signal transduction 2
gma00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 5
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 4
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
bra04141 Protein processing in endoplasmic reticulum 4
bra01210 2-Oxocarboxylic acid metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 5
mtr03083 Polycomb repressive complex 2
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 6
tae03083 Polycomb repressive complex 6
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 6
tae03083 Polycomb repressive complex 6
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
bna03083 Polycomb repressive complex 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
bna03083 Polycomb repressive complex 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 3
sbi03083 Polycomb repressive complex 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836431 100819221 100801159 101258377 101256864 4345332 541681 103837453 103873731 100244903 7453794 7456903 11414050 123144362 123136940 123402944 107949697 107886255 106422589 106347870 8073075 102587267 102605718 102617679 100834631 107828384 107830951
The preparation time of this page was 0.3 [sec].