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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   APE1   acclimation of photosynthesis to environment 
 ath-r.7   APE1   acclimation of photosynthesis to environment 
 ath-m.9   APE1   acclimation of photosynthesis to environment 
 ath-e.2   APE1   acclimation of photosynthesis to environment 
 ath-m.4.bio   APE1   acclimation of photosynthesis to environment 
 ath-m.4.hor   APE1   acclimation of photosynthesis to environment 
 ath-m.4.lig   APE1   acclimation of photosynthesis to environment 
 ath-m.4.str   APE1   acclimation of photosynthesis to environment 
 ath-m.4.tis   APE1   acclimation of photosynthesis to environment 
 gma-u.5   100810571   thylakoid membrane protein slr0575-like 
 vvi-u.5   100242947   uncharacterized LOC100242947 
 ppo-u.5   18107396   uncharacterized LOC18107396 
 ppo-u.5   7494542   uncharacterized LOC7494542 
 mtr-u.5   25495610   thylakoid membrane protein slr0575 
 sly-u.5   101255370   uncharacterized LOC101255370 
 osa-u.5   4345365   uncharacterized LOC4345365 
 zma-u.5   100191267   uncharacterized LOC100191267 

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Top 50 coexpressed genes to APE1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to APE1 (ath-u.5 coexpression data)

CoexMap"833856"


athAPE1 | Entrez gene ID : 833856      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 9 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0042651 [list] [network] thylakoid membrane  (348 genes)  IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001190435.1 [sequence] [blastp]
NP_198682.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 1,  mito 1,  plas 1,  E.R. 1,  cyto_nucl 1,  cysk_nucl 1,  E.R._plas 1,  mito_plas 1  (predict for NP_001190435.1)
chlo 9,  cyto_nucl 1,  E.R._vacu 1  (predict for NP_198682.3)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001190435.1)
chlo 7  (predict for NP_198682.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
APE1
ath-r.7
for
APE1
ath-m.9
for
APE1
ath-e.2
for
APE1
ath-m.4.bio
for
APE1
ath-m.4.hor
for
APE1
ath-m.4.lig
for
APE1
ath-m.4.str
for
APE1
ath-m.4.tis
for
APE1
gma-u.5
for
100810571
vvi-u.5
for
100242947
ppo-u.5
for
18107396
ppo-u.5
for
7494542
mtr-u.5
for
25495610
sly-u.5
for
101255370
osa-u.5
for
4345365
zma-u.5
for
100191267


Ortholog ID: 10340
Species ath bra bna bna ghi ghi cit gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol APE1 LOC103850127 LOC106352659 LOC106382470 LOC107893765 LOC107916970 LOC102620177 LOC100810571 LOC100242947 LOC18107396 LOC7494542 LOC25495610 LOC101255370 LOC102580323 LOC107824447 LOC107820138 LOC4345365 LOC100191267 LOC123154793 LOC123155894 LOC123407002 LOC8069886 LOC100830341 CHLRE_16g665250v5
Function* acclimation of photosynthesis to environment thylakoid membrane protein slr0575 thylakoid membrane protein slr0575-like thylakoid membrane protein slr0575 thylakoid membrane protein slr0575 thylakoid membrane protein slr0575 uncharacterized LOC102620177 thylakoid membrane protein slr0575-like uncharacterized LOC100242947 uncharacterized LOC18107396 uncharacterized LOC7494542 thylakoid membrane protein slr0575 uncharacterized LOC101255370 thylakoid membrane protein slr0575 uncharacterized LOC107824447 uncharacterized LOC107820138 uncharacterized LOC4345365 uncharacterized LOC100191267 thylakoid membrane protein slr0575 thylakoid membrane protein slr0575 thylakoid membrane protein slr0575 thylakoid membrane protein slr0575 thylakoid membrane protein slr0575 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00196 Photosynthesis - antenna proteins 4
bra00010 Glycolysis / Gluconeogenesis 3
bra00030 Pentose phosphate pathway 2
bra00051 Fructose and mannose metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 2
bna00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 8
ghi01200 Carbon metabolism 4
ghi00710 Carbon fixation by Calvin cycle 3
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 7
ghi00710 Carbon fixation by Calvin cycle 3
ghi01200 Carbon metabolism 3
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 3
cit00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 2
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00908 Zeatin biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 4
sly00630 Glyoxylate and dicarboxylate metabolism 3
sly00260 Glycine, serine and threonine metabolism 2
sly00190 Oxidative phosphorylation 2
sly00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 3
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00195 Photosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 833856 103850127 106352659 106382470 107893765 107916970 102620177 100810571 100242947 18107396 7494542 25495610 101255370 102580323 107824447 107820138 4345365 100191267 123154793 123155894 123407002 8069886 100830341 5727018
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