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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G40460   cyclin-dependent kinase inhibitor SMR3-like protein 
 ath-r.7   AT5G40460   cyclin-dependent kinase inhibitor SMR3-like protein 
 ath-m.9   AT5G40460   cyclin-dependent kinase inhibitor SMR3-like protein 
 ath-e.2   AT5G40460   cyclin-dependent kinase inhibitor SMR3-like protein 
 ath-m.4.bio   AT5G40460   cyclin-dependent kinase inhibitor SMR3-like protein 
 ath-m.4.hor   AT5G40460   cyclin-dependent kinase inhibitor SMR3-like protein 
 ath-m.4.lig   AT5G40460   cyclin-dependent kinase inhibitor SMR3-like protein 
 ath-m.4.str   AT5G40460   cyclin-dependent kinase inhibitor SMR3-like protein 
 ath-m.4.tis   AT5G40460   cyclin-dependent kinase inhibitor SMR3-like protein 
 ath-u.5   AT1G10690   cyclin-dependent kinase inhibitor 
 bra-r.6   103863994   cyclin-dependent protein kinase inhibitor SMR6 
 ghi-r.1   107892258   cyclin-dependent protein kinase inhibitor SMR6 
 ghi-r.1   107909696   cyclin-dependent protein kinase inhibitor SMR6 
 cit-r.1   102611595   hypothetical protein 
 cit-r.1   102619661   cyclin-dependent protein kinase inhibitor SMR6 
 gma-u.5   100799997   cyclin-dependent protein kinase inhibitor SMR6 
 gma-u.5   100801316   cyclin-dependent protein kinase inhibitor SMR6 
 vvi-u.5   100268049   uncharacterized LOC100268049 
 vvi-u.5   100266480   cyclin-dependent protein kinase inhibitor SMR6 
 ppo-u.5   7461311   cyclin-dependent protein kinase inhibitor SMR6 
 ppo-u.5   7460759   cyclin-dependent protein kinase inhibitor SMR6 
 ppo-u.5   7469049   cyclin-dependent protein kinase inhibitor SMR6 
 mtr-u.5   25501448   cyclin-dependent protein kinase inhibitor SMR6 
 mtr-u.5   11434424   cyclin-dependent protein kinase inhibitor SMR6 
 mtr-u.5   11411968   cyclin-dependent protein kinase inhibitor SMR6 
 sly-u.5   101257136   uncharacterized LOC101257136 
 sly-u.5   101259901   cyclin-dependent protein kinase inhibitor SMR6 
 sot-r.1   102591380   uncharacterized LOC102591380 
 nta-r.1   107784254   cyclin-dependent protein kinase inhibitor SMR6-like 
 nta-r.1   107803056   cyclin-dependent protein kinase inhibitor SMR6-like 

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Top 50 coexpressed genes to AT5G40460 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G40460 (ath-u.5 coexpression data)

CoexMap"834044"


athAT5G40460 | Entrez gene ID : 834044      
Species ath bra ghi cit gma vvi ppo mtr sly sot nta cre hvu bna tae bdi osa zma sbi
Paralog 10 1 2 2 2 2 3 3 2 1 2 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032875 [list] [network] regulation of DNA endoreduplication  (36 genes)  IEA  
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_198862.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 2,  cyto 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_198862.1)
Subcellular
localization
TargetP
other 8  (predict for NP_198862.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G40460
ath-r.7
for
AT5G40460
ath-m.9
for
AT5G40460
ath-e.2
for
AT5G40460
ath-m.4.bio
for
AT5G40460
ath-m.4.hor
for
AT5G40460
ath-m.4.lig
for
AT5G40460
ath-m.4.str
for
AT5G40460
ath-m.4.tis
for
AT5G40460
ath-u.5
for
AT1G10690
bra-r.6
for
103863994
ghi-r.1
for
107892258
ghi-r.1
for
107909696
cit-r.1
for
102611595
cit-r.1
for
102619661
gma-u.5
for
100799997
gma-u.5
for
100801316
vvi-u.5
for
100268049
vvi-u.5
for
100266480
ppo-u.5
for
7461311
ppo-u.5
for
7460759
ppo-u.5
for
7469049
mtr-u.5
for
25501448
mtr-u.5
for
11434424
mtr-u.5
for
11411968
sly-u.5
for
101257136
sly-u.5
for
101259901
sot-r.1
for
102591380
nta-r.1
for
107784254
nta-r.1
for
107803056


Ortholog ID: 3111
Species ath bra ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sot nta nta
Symbol AT1G10690 LOC103871851 LOC107893000 LOC121214749 LOC102611595 LOC102619661 LOC100801316 LOC100790537 LOC100820224 LOC100268049 LOC100266480 LOC7461311 LOC7460759 LOC7469049 LOC25501448 LOC11434424 LOC11411968 LOC101257136 LOC101259901 LOC102591380 LOC107784254 LOC107803056
Function* cyclin-dependent kinase inhibitor cyclin-dependent protein kinase inhibitor SMR8 cyclin-dependent protein kinase inhibitor SMR6 cyclin-dependent protein kinase inhibitor SMR6 hypothetical protein cyclin-dependent protein kinase inhibitor SMR6 cyclin-dependent protein kinase inhibitor SMR6 cyclin-dependent protein kinase inhibitor SMR6 cyclin-dependent protein kinase inhibitor SMR6 uncharacterized LOC100268049 cyclin-dependent protein kinase inhibitor SMR6 cyclin-dependent protein kinase inhibitor SMR6 cyclin-dependent protein kinase inhibitor SMR6 cyclin-dependent protein kinase inhibitor SMR6 cyclin-dependent protein kinase inhibitor SMR6 cyclin-dependent protein kinase inhibitor SMR6 cyclin-dependent protein kinase inhibitor SMR6 uncharacterized LOC101257136 cyclin-dependent protein kinase inhibitor SMR6 uncharacterized LOC102591380 cyclin-dependent protein kinase inhibitor SMR6-like cyclin-dependent protein kinase inhibitor SMR6-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 8
ghi03410 Base excision repair 6
ghi03420 Nucleotide excision repair 4
ghi03430 Mismatch repair 4
ghi03440 Homologous recombination 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
cit00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 8
gma03082 ATP-dependent chromatin remodeling 2
gma00240 Pyrimidine metabolism 2
gma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 5
gma00240 Pyrimidine metabolism 3
gma01232 Nucleotide metabolism 3
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 2
vvi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 2
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo00480 Glutathione metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 2
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 10
mtr03420 Nucleotide excision repair 2
mtr03430 Mismatch repair 2
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837612 103871851 107893000 121214749 102611595 102619661 100801316 100790537 100820224 100268049 100266480 7461311 7460759 7469049 25501448 11434424 11411968 101257136 101259901 102591380 107784254 107803056
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