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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G42200   RING/U-box superfamily protein 
 ath-r.7   AT5G42200   RING/U-box superfamily protein 
 ath-m.9   AT5G42200   RING/U-box superfamily protein 
 ath-e.2   AT5G42200   RING/U-box superfamily protein 
 ath-m.4.bio   AT5G42200   RING/U-box superfamily protein 
 ath-m.4.hor   AT5G42200   RING/U-box superfamily protein 
 ath-m.4.lig   AT5G42200   RING/U-box superfamily protein 
 ath-m.4.str   AT5G42200   RING/U-box superfamily protein 
 ath-m.4.tis   AT5G42200   RING/U-box superfamily protein 
 gma-u.5   102667575   E3 ubiquitin-protein ligase ATL23 
 gma-u.5   100811160   E3 ubiquitin-protein ligase ATL23 
 vvi-u.5   100853467   RING-H2 finger protein ATL56 
 ppo-u.5   7493995   E3 ubiquitin-protein ligase ATL23 
 ppo-u.5   7490624   E3 ubiquitin-protein ligase ATL23 
 mtr-u.5   120577925   E3 ubiquitin-protein ligase ATL23 
 sly-u.5   101245541   E3 ubiquitin-protein ligase ATL23 
 osa-u.5   107280049   E3 ubiquitin-protein ligase ATL41-like 

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Top 50 coexpressed genes to AT5G42200 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G42200 (ath-u.5 coexpression data)

CoexMap"834225"


athAT5G42200 | Entrez gene ID : 834225      
Species ath gma vvi ppo mtr sly osa tae hvu zma ghi bdi cit bra cre sbi bna nta sot
Paralog 9 2 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016567 [list] [network] protein ubiquitination  (170 genes)  IDA  
GO:0071456 [list] [network] cellular response to hypoxia  (241 genes)  HEP  
GO CC
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (268 genes)  IDA  
Protein NP_199035.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  vacu 1  (predict for NP_199035.1)
Subcellular
localization
TargetP
other 7  (predict for NP_199035.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G42200

.
ath-r.7
for
AT5G42200

.
ath-m.9
for
AT5G42200

.
ath-e.2
for
AT5G42200

.
ath-m.4.bio
for
AT5G42200

.
ath-m.4.hor
for
AT5G42200

.
ath-m.4.lig
for
AT5G42200

.
ath-m.4.str
for
AT5G42200

.
ath-m.4.tis
for
AT5G42200

.
gma-u.5
for
102667575

.
gma-u.5
for
100811160

.
vvi-u.5
for
100853467

.
ppo-u.5
for
7493995

.
ppo-u.5
for
7490624

.
mtr-u.5
for
120577925

.
sly-u.5
for
101245541

.
osa-u.5
for
107280049

.


Ortholog ID: 1553
Species ath gma sly bra ppo ppo ghi bna sot sot cit bdi nta
Symbol AT5G42200 LOC102667575 LOC101245541 LOC103832296 LOC7490624 LOC7493995 LOC107905539 LOC111202631 LOC102588173 LOC102579819 LOC112498303 LOC100834671 LOC107813148
Function* RING/U-box superfamily protein E3 ubiquitin-protein ligase ATL23 E3 ubiquitin-protein ligase ATL23 E3 ubiquitin-protein ligase ATL23 E3 ubiquitin-protein ligase ATL23 E3 ubiquitin-protein ligase ATL23 E3 ubiquitin-protein ligase ATL23 E3 ubiquitin-protein ligase ATL23-like RING-H2 finger protein ATL3-like E3 ubiquitin-protein ligase ATL23 RING-H2 finger protein ATL56-like E3 ubiquitin-protein ligase ATL23 RING-H2 finger protein ATL77-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00562 Inositol phosphate metabolism 4
bna00564 Glycerophospholipid metabolism 4
bna00565 Ether lipid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834225 102667575 101245541 103832296 7490624 7493995 107905539 111202631 102588173 102579819 112498303 100834671 107813148
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