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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   VAR1   FtsH extracellular protease family 
 ath-r.7   VAR1   FtsH extracellular protease family 
 ath-m.9   VAR1   FtsH extracellular protease family 
 ath-e.2   VAR1   FtsH extracellular protease family 
 ath-m.4.bio   VAR1   FtsH extracellular protease family 
 ath-m.4.hor   VAR1   FtsH extracellular protease family 
 ath-m.4.lig   VAR1   FtsH extracellular protease family 
 ath-m.4.str   VAR1   FtsH extracellular protease family 
 ath-m.4.tis   VAR1   FtsH extracellular protease family 
 ath-u.5   FTSH1   FTSH protease 1 
 gma-u.5   100807408   ATP-dependent zinc metalloprotease FTSH, chloroplastic 
 gma-u.5   100803824   ATP-dependent zinc metalloprotease FTSH, chloroplastic-like 
 vvi-u.5   100250509   ATP-dependent zinc metalloprotease FTSH, chloroplastic 
 ppo-u.5   7496874   ATP-dependent zinc metalloprotease FTSH, chloroplastic 
 ppo-u.5   7494681   ATP-dependent zinc metalloprotease FTSH, chloroplastic 
 mtr-u.5   25490290   ATP-dependent zinc metalloprotease FTSH, chloroplastic 
 sly-u.5   100037730   FtsH-like protein precursor 
 osa-u.5   4342113   ATP-dependent zinc metalloprotease FTSH 1, chloroplastic-like 
 zma-u.5   100502422   uncharacterized LOC100502422 

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Top 50 coexpressed genes to VAR1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to VAR1 (ath-u.5 coexpression data)

CoexMap"834232"


athVAR1 | Entrez gene ID : 834232      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 10 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010304 [list] [network] PSII associated light-harvesting complex II catabolic process  (8 genes)  TAS  
GO:0010205 [list] [network] photoinhibition  (11 genes)  IMP  
GO:0048564 [list] [network] photosystem I assembly  (17 genes)  IMP  
GO:0030163 [list] [network] protein catabolic process  (264 genes)  IDA  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
GO:0004176 [list] [network] ATP-dependent peptidase activity  (19 genes)  ISS  
GO:0016887 [list] [network] ATP hydrolysis activity  (205 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_568604.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_568604.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_568604.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
VAR1
ath-r.7
for
VAR1
ath-m.9
for
VAR1
ath-e.2
for
VAR1
ath-m.4.bio
for
VAR1
ath-m.4.hor
for
VAR1
ath-m.4.lig
for
VAR1
ath-m.4.str
for
VAR1
ath-m.4.tis
for
VAR1
ath-u.5
for
FTSH1
gma-u.5
for
100807408
gma-u.5
for
100803824
vvi-u.5
for
100250509
ppo-u.5
for
7496874
ppo-u.5
for
7494681
mtr-u.5
for
25490290
sly-u.5
for
100037730
osa-u.5
for
4342113
zma-u.5
for
100502422


Ortholog ID: 7744
Species ath ath bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol VAR1 FTSH1 LOC103831194 LOC106353966 LOC111199397 LOC107905659 LOC107917971 LOC102607431 LOC100803824 LOC100807408 LOC100250509 LOC7494681 LOC7496874 LOC25490290 LOC100037730 LOC102591510 LOC107816214 LOC107831424 LOC4342113 LOC100502422 LOC123149765 LOC123162610 LOC123408493 LOC110431051 LOC100842727 CHLRE_12g485800v5
Function* FtsH extracellular protease family FTSH protease 1 ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH 1, chloroplastic-like ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH 5, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic-like ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic FtsH-like protein precursor ATP-dependent zinc metalloprotease FTSH, chloroplastic ATP-dependent zinc metalloprotease FTSH, chloroplastic-like ATP-dependent zinc metalloprotease FTSH, chloroplastic-like ATP-dependent zinc metalloprotease FTSH 1, chloroplastic-like uncharacterized LOC100502422 ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH 1, chloroplastic ATP-dependent zinc metalloprotease FTSH 1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 3
bra00010 Glycolysis / Gluconeogenesis 2
bra00260 Glycine, serine and threonine metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 4
ppo00250 Alanine, aspartate and glutamate metabolism 2
ppo00260 Glycine, serine and threonine metabolism 2
ppo00630 Glyoxylate and dicarboxylate metabolism 2
ppo01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 3
sly00195 Photosynthesis 3
sly00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00620 Pyruvate metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834232 841447 103831194 106353966 111199397 107905659 107917971 102607431 100803824 100807408 100250509 7494681 7496874 25490290 100037730 102591510 107816214 107831424 4342113 100502422 123149765 123162610 123408493 110431051 100842727 5716615
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