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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   COP8   Proteasome component (PCI) domain protein 
 ath-r.7   COP8   Proteasome component (PCI) domain protein 
 ath-m.9   COP8   Proteasome component (PCI) domain protein 
 ath-e.2   COP8   Proteasome component (PCI) domain protein 
 ath-m.4.bio   COP8   Proteasome component (PCI) domain protein 
 ath-m.4.hor   COP8   Proteasome component (PCI) domain protein 
 ath-m.4.lig   COP8   Proteasome component (PCI) domain protein 
 ath-m.4.str   COP8   Proteasome component (PCI) domain protein 
 ath-m.4.tis   COP8   Proteasome component (PCI) domain protein 
 bra-r.6   103848572   COP9 signalosome complex subunit 4 
 bra-r.6   103828002   COP9 signalosome complex subunit 4 
 bna-r.1   106431714   COP9 signalosome complex subunit 4 
 bna-r.1   106396389   COP9 signalosome complex subunit 4 
 bna-r.1   106349541   COP9 signalosome complex subunit 4 
 ghi-r.1   107957569   COP9 signalosome complex subunit 4 
 ghi-r.1   107921235   COP9 signalosome complex subunit 4 
 ghi-r.1   107916654   COP9 signalosome complex subunit 4 
 cit-r.1   102627923   COP9 signalosome complex subunit 4 
 gma-u.5   100819593   COP9 signalosome complex subunit 4 
 gma-u.5   100793394   COP9 signalosome complex subunit 4 
 vvi-u.5   100254062   COP9 signalosome complex subunit 4 
 ppo-u.5   18096581   COP9 signalosome complex subunit 4 
 ppo-u.5   7463397   COP9 signalosome complex subunit 4 
 mtr-u.5   25480548   COP9 signalosome complex subunit 4 
 sly-u.5   CSN4   COP9 signalosome complex subunit 4 
 sot-r.1   102583259   COP9 signalosome complex subunit 4 
 nta-r.1   107790558   COP9 signalosome complex subunit 4 
 nta-r.1   107823129   COP9 signalosome complex subunit 4 
 osa-u.5   4331948   COP9 signalosome complex subunit 4 
 zma-u.5   100192688   COP9 signalosome complex subunit 4 
 tae-r.2   123093120   COP9 signalosome complex subunit 4 
 tae-r.2   123098391   COP9 signalosome complex subunit 4 
 tae-r.2   542907   COP9 signalosome complex subunit 4 
 hvu-r.1   123449430   COP9 signalosome complex subunit 4 
 sbi-r.1   8054249   COP9 signalosome complex subunit 4 
 bdi-r.1   100834438   COP9 signalosome complex subunit 4 
 cre-r.1   CHLRE_11g478240v5   uncharacterized protein 

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Top 50 coexpressed genes to COP8 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to COP8 (ath-u.5 coexpression data)

CoexMap"834312"


athCOP8 | Entrez gene ID : 834312      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 2 1 2 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010971 [list] [network] positive regulation of G2/M transition of mitotic cell cycle  (5 genes)  IMP  
GO:0000338 [list] [network] protein deneddylation  (11 genes)  IMP  
GO:0010100 [list] [network] negative regulation of photomorphogenesis  (16 genes)  IMP  
GO:0009640 [list] [network] photomorphogenesis  (77 genes)  TAS  
GO CC
GO:0008180 [list] [network] COP9 signalosome  (10 genes)  IDA IPI TAS  
GO:0032991 [list] [network] protein-containing complex  (1548 genes)  IDA  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_199111.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  cyto 3,  nucl 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_199111.1)
Subcellular
localization
TargetP
other 8  (predict for NP_199111.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
COP8
ath-r.7
for
COP8
ath-m.9
for
COP8
ath-e.2
for
COP8
ath-m.4.bio
for
COP8
ath-m.4.hor
for
COP8
ath-m.4.lig
for
COP8
ath-m.4.str
for
COP8
ath-m.4.tis
for
COP8
bra-r.6
for
103848572
bra-r.6
for
103828002
bna-r.1
for
106431714
bna-r.1
for
106396389
bna-r.1
for
106349541
ghi-r.1
for
107957569
ghi-r.1
for
107921235
ghi-r.1
for
107916654
cit-r.1
for
102627923
gma-u.5
for
100819593
gma-u.5
for
100793394
vvi-u.5
for
100254062
ppo-u.5
for
18096581
ppo-u.5
for
7463397
mtr-u.5
for
25480548
sly-u.5
for
CSN4
sot-r.1
for
102583259
nta-r.1
for
107790558
nta-r.1
for
107823129
osa-u.5
for
4331948
zma-u.5
for
100192688
tae-r.2
for
123093120
tae-r.2
for
123098391
tae-r.2
for
542907
hvu-r.1
for
123449430
sbi-r.1
for
8054249
bdi-r.1
for
100834438
cre-r.1
for
CHLRE_11g478240v5


Ortholog ID: 6989
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol COP8 LOC103848572 LOC103828002 LOC106431714 LOC106396389 LOC106349541 LOC107957569 LOC107921235 LOC107910166 LOC102627923 LOC100819593 LOC100793394 LOC100254062 LOC18096581 LOC7463397 LOC25480548 CSN4 LOC102583259 LOC107790558 LOC107823129 LOC4331948 LOC100192688 LOC123093120 LOC123098391 LOC542907 LOC123449430 LOC8054249 LOC100834438 CHLRE_11g478240v5
Function* Proteasome component (PCI) domain protein COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra00970 Aminoacyl-tRNA biosynthesis 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00510 N-Glycan biosynthesis 6
ghi04141 Protein processing in endoplasmic reticulum 6
ghi04145 Phagosome 4
ghi03060 Protein export 2
ghi00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03013 Nucleocytoplasmic transport 2
gma03420 Nucleotide excision repair 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 8
sly00010 Glycolysis / Gluconeogenesis 2
sly04141 Protein processing in endoplasmic reticulum 2
sly03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 5
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 11
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 10
nta03082 ATP-dependent chromatin remodeling 3
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 5
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 4
zma03420 Nucleotide excision repair 3
zma03083 Polycomb repressive complex 2
zma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 5
tae04141 Protein processing in endoplasmic reticulum 3
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 3
sbi03083 Polycomb repressive complex 2
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834312 103848572 103828002 106431714 106396389 106349541 107957569 107921235 107910166 102627923 100819593 100793394 100254062 18096581 7463397 25480548 101255392 102583259 107790558 107823129 4331948 100192688 123093120 123098391 542907 123449430 8054249 100834438 5722889
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