ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT5G44860	polyadenylate-binding protein 1-B-binding protein
ath-r.7	AT5G44860	polyadenylate-binding protein 1-B-binding protein
ath-m.9	AT5G44860	polyadenylate-binding protein 1-B-binding protein
ath-e.2	AT5G44860	polyadenylate-binding protein 1-B-binding protein
ath-m.4.bio	AT5G44860	polyadenylate-binding protein 1-B-binding protein
ath-m.4.hor	AT5G44860	polyadenylate-binding protein 1-B-binding protein
ath-m.4.lig	AT5G44860	polyadenylate-binding protein 1-B-binding protein
ath-m.4.str	AT5G44860	polyadenylate-binding protein 1-B-binding protein
ath-m.4.tis	AT5G44860	polyadenylate-binding protein 1-B-binding protein
ath-u.5	AT4G19950	polyadenylate-binding protein 1-B-binding protein
ath-u.5	AT1G31130	polyadenylate-binding protein 1-B-binding protein
bra-r.6	103828788	uncharacterized LOC103828788
bra-r.6	103827822	uncharacterized LOC103827822
bra-r.6	103840270	uncharacterized LOC103840270
bna-r.1	106357908	uncharacterized LOC106357908
bna-r.1	BNACNNG10920D	uncharacterized BNACNNG10920D
bna-r.1	BNAA09G25400D	uncharacterized BNAA09G25400D
ghi-r.1	107947429	uncharacterized LOC107947429
ghi-r.1	107908534	uncharacterized LOC107908534
ghi-r.1	107939240	uncharacterized LOC107939240
cit-r.1	102615278	uncharacterized LOC102615278
gma-u.5	100797824	uncharacterized LOC100797824
vvi-u.5	100252459	uncharacterized LOC100252459
ppo-u.5	7453983	uncharacterized LOC7453983
ppo-u.5	7481808	uncharacterized LOC7481808
mtr-u.5	11445843	uncharacterized LOC11445843
mtr-u.5	11413384	uncharacterized LOC11413384
sly-u.5	101247571	uncharacterized LOC101247571
sly-u.5	101252815	uncharacterized LOC101252815
sot-r.1	102605114	uncharacterized LOC102605114
sot-r.1	102603419	uncharacterized LOC102603419
nta-r.1	107797200	uncharacterized LOC107797200
nta-r.1	107794301	uncharacterized LOC107794301
nta-r.1	107794294	uncharacterized LOC107794294
osa-u.5	4327955	uncharacterized LOC4327955
zma-u.5	100277579	uncharacterized LOC100277579
zma-u.5	100276723	uncharacterized LOC100276723
tae-r.2	123071081	uncharacterized LOC123071081
tae-r.2	123079446	uncharacterized LOC123079446
tae-r.2	123062312	uncharacterized LOC123062312
hvu-r.1	123444620	uncharacterized LOC123444620
sbi-r.1	8055249	uncharacterized LOC8055249
bdi-r.1	100837055	uncharacterized LOC100837055

Top 50 coexpressed genes to AT5G44860 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT5G44860 (ath-u.5 coexpression data)

CoexMap"834516"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009507 [list] [network] chloroplast

(5014 genes)

ISM

GO MF

Protein

NP_001330364.1 [sequence] [blastp]
NP_199299.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 4, E.R. 3, golg_plas 3	(predict for NP_001330364.1)
plas 4, E.R. 3, golg_plas 3	(predict for NP_199299.1)

Subcellular
localization
TargetP

other 9	(predict for NP_001330364.1)
other 9	(predict for NP_199299.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT5G44860	ath-r.7 for AT5G44860	ath-m.9 for AT5G44860	ath-e.2 for AT5G44860	ath-m.4.bio for AT5G44860	ath-m.4.hor for AT5G44860	ath-m.4.lig for AT5G44860	ath-m.4.str for AT5G44860	ath-m.4.tis for AT5G44860	ath-u.5 for AT4G19950	ath-u.5 for AT1G31130	bra-r.6 for 103828788	bra-r.6 for 103827822	bra-r.6 for 103840270	bna-r.1 for 106357908	bna-r.1 for BNACNNG10920D	bna-r.1 for BNAA09G25400D	ghi-r.1 for 107947429	ghi-r.1 for 107908534	ghi-r.1 for 107939240	cit-r.1 for 102615278	gma-u.5 for 100797824	vvi-u.5 for 100252459	ppo-u.5 for 7453983	ppo-u.5 for 7481808	mtr-u.5 for 11445843	mtr-u.5 for 11413384	sly-u.5 for 101247571	sly-u.5 for 101252815	sot-r.1 for 102605114	sot-r.1 for 102603419	nta-r.1 for 107797200	nta-r.1 for 107794301	nta-r.1 for 107794294	osa-u.5 for 4327955	zma-u.5 for 100277579	zma-u.5 for 100276723	tae-r.2 for 123071081	tae-r.2 for 123079446	tae-r.2 for 123062312	hvu-r.1 for 123444620	sbi-r.1 for 8055249	bdi-r.1 for 100837055

Ortholog

Ortholog ID: 4595

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

polyadenylate-binding protein 1-B-binding protein

uncharacterized LOC103828788

uncharacterized LOC103827822

uncharacterized LOC103840270

uncharacterized BNAA09G25400D

uncharacterized LOC106375479

uncharacterized LOC107947429

uncharacterized LOC107908534

uncharacterized LOC107939240

uncharacterized LOC102615278

uncharacterized LOC100797824

uncharacterized LOC100252459

uncharacterized LOC7453983

uncharacterized LOC7481808

uncharacterized LOC11445843

uncharacterized LOC11413384

uncharacterized LOC101247571

uncharacterized LOC101252815

uncharacterized LOC102605114

uncharacterized LOC102603419

uncharacterized LOC107794301

uncharacterized LOC107794294

uncharacterized LOC107785730

uncharacterized LOC4327955

uncharacterized LOC100277579

uncharacterized LOC100276723

uncharacterized LOC123071081

uncharacterized LOC123079446

uncharacterized LOC123062312

uncharacterized LOC123444620

uncharacterized LOC8055249

uncharacterized LOC100837055

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00510	N-Glycan biosynthesis	2
bra00513	Various types of N-glycan biosynthesis	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	3
mtr00190	Oxidative phosphorylation	2
mtr04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00270	Cysteine and methionine metabolism	2
sly04141	Protein processing in endoplasmic reticulum	2
sly00908	Zeatin biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01250	Biosynthesis of nucleotide sugars	5
sot00520	Amino sugar and nucleotide sugar metabolism	4
sot00541	Biosynthesis of various nucleotide sugars	3
sot00040	Pentose and glucuronate interconversions	2
sot00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	3
nta00900	Terpenoid backbone biosynthesis	2
nta00010	Glycolysis / Gluconeogenesis	2
nta00260	Glycine, serine and threonine metabolism	2
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00511	Other glycan degradation	2
tae00513	Various types of N-glycan biosynthesis	2
tae00520	Amino sugar and nucleotide sugar metabolism	2
tae00531	Glycosaminoglycan degradation	2
tae00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00510	N-Glycan biosynthesis	2
sbi00513	Various types of N-glycan biosynthesis	2
sbi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

834516

827739

839998

103828788

103827822

103840270

106349179

106375479

107947429

107908534

107939240

102615278

100797824

100252459

7453983

7481808

11445843

11413384

101247571

101252815

102605114

102603419

107794301

107794294

107785730

4327955

100277579

100276723

123071081

123079446

123062312

123444620

8055249

100837055

The preparation time of this page was 0.3 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	3	3	3	1	1	1	2	2	2	2	3	1	2	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G44860 (ath-u.5 coexpression data)

Top 50 enrichment test to AT5G44860 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**