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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   GAS41   YEATS family protein 
 ath-r.7   GAS41   YEATS family protein 
 ath-m.9   GAS41   YEATS family protein 
 ath-e.2   GAS41   YEATS family protein 
 ath-m.4.bio   GAS41   YEATS family protein 
 ath-m.4.hor   GAS41   YEATS family protein 
 ath-m.4.lig   GAS41   YEATS family protein 
 ath-m.4.str   GAS41   YEATS family protein 
 ath-m.4.tis   GAS41   YEATS family protein 
 ath-u.5   TAF14   TBP-associated factor 14 
 gma-u.5   100819921   transcription initiation factor TFIID subunit 14b 
 gma-u.5   100799891   transcription initiation factor TFIID subunit 14b 
 gma-u.5   100790602   transcription initiation factor TFIID subunit 14b 
 vvi-u.5   100247042   transcription initiation factor TFIID subunit 14b 
 vvi-u.5   100257470   transcription initiation factor TFIID subunit 14b 
 ppo-u.5   7494288   transcription initiation factor TFIID subunit 14b 
 ppo-u.5   7453610   transcription initiation factor TFIID subunit 14b 
 mtr-u.5   11425339   transcription initiation factor TFIID subunit 14b 
 mtr-u.5   11442795   transcription initiation factor TFIID subunit 14b 
 sly-u.5   101257425   transcription initiation factor TFIID subunit 14b 
 sly-u.5   101248968   transcription initiation factor TFIID subunit 14b 
 osa-u.5   4340047   transcription initiation factor TFIID subunit 14b 
 zma-u.5   100273936   uncharacterized LOC100273936 

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Top 50 coexpressed genes to GAS41 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to GAS41 (ath-u.5 coexpression data)

CoexMap"834599"


athGAS41 | Entrez gene ID : 834599      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 10 3 2 2 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03082 [list] [network] ATP-dependent chromatin remodeling (64 genes)
GO BP
GO:0048510 [list] [network] regulation of timing of transition from vegetative to reproductive phase  (43 genes)  IMP  
GO:2000028 [list] [network] regulation of photoperiodism, flowering  (101 genes)  IGI  
GO CC
GO:0000812 [list] [network] Swr1 complex  (13 genes)  IDA  
GO:0035267 [list] [network] NuA4 histone acetyltransferase complex  (14 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  IPI ISS  
GO MF
GO:0010485 [list] [network] histone H4 acetyltransferase activity  (5 genes)  IGI  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001190475.1 [sequence] [blastp]
NP_199373.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  plas 1,  pero 1  (predict for NP_001190475.1)
nucl 6,  plas 1,  pero 1  (predict for NP_199373.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001190475.1)
other 8,  chlo 3  (predict for NP_199373.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
GAS41

.
ath-r.7
for
GAS41

.
ath-m.9
for
GAS41

.
ath-e.2
for
GAS41

.
ath-m.4.bio
for
GAS41

.
ath-m.4.hor
for
GAS41

.
ath-m.4.lig
for
GAS41

.
ath-m.4.str
for
GAS41

.
ath-m.4.tis
for
GAS41

.
ath-u.5
for
TAF14

.
gma-u.5
for
100819921

.
gma-u.5
for
100799891

.
gma-u.5
for
100790602

.
vvi-u.5
for
100247042

.
vvi-u.5
for
100257470

.
ppo-u.5
for
7494288

.
ppo-u.5
for
7453610

.
mtr-u.5
for
11425339

.
mtr-u.5
for
11442795

.
sly-u.5
for
101257425

.
sly-u.5
for
101248968

.
osa-u.5
for
4340047

.
zma-u.5
for
100273936

.


Ortholog ID: 4679
Species ath ath gma gma sly sly osa zma bra vvi vvi ppo mtr mtr tae tae hvu ghi ghi bna cre sbi sot cit cit bdi nta nta
Symbol GAS41 TAF14 LOC100790602 LOC100799891 LOC101248968 LOC101257425 LOC4340047 LOC100273936 LOC103827787 LOC100247042 LOC100257470 LOC7494288 LOC11425339 LOC11442795 LOC123149312 LOC123087873 LOC123410910 LOC107902022 LOC107927880 LOC106375374 CHLRE_06g284050v5 LOC110430776 LOC102586541 LOC102629041 LOC102615265 LOC100828557 LOC107765768 LOC107832376
Function* YEATS family protein TBP-associated factor 14 transcription initiation factor TFIID subunit 14b transcription initiation factor TFIID subunit 14b transcription initiation factor TFIID subunit 14b transcription initiation factor TFIID subunit 14b transcription initiation factor TFIID subunit 14b uncharacterized LOC100273936 transcription initiation factor TFIID subunit 14b transcription initiation factor TFIID subunit 14b transcription initiation factor TFIID subunit 14b transcription initiation factor TFIID subunit 14b transcription initiation factor TFIID subunit 14b transcription initiation factor TFIID subunit 14b transcription initiation factor TFIID subunit 14b transcription initiation factor TFIID subunit 14b transcription initiation factor TFIID subunit 14b-like transcription initiation factor TFIID subunit 14b transcription initiation factor TFIID subunit 14b transcription initiation factor TFIID subunit 14b uncharacterized protein transcription initiation factor TFIID subunit 14b-like transcription initiation factor TFIID subunit 14b transcription initiation factor TFIID subunit 14b-like transcription initiation factor TFIID subunit 14b transcription initiation factor TFIID subunit 14b transcription initiation factor TFIID subunit 14b transcription initiation factor TFIID subunit 14b
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03420 Nucleotide excision repair 3
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra03250 Viral life cycle - HIV-1 3
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 8
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 5
tae03015 mRNA surveillance pathway 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 5
tae03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03010 Ribosome 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
bna03008 Ribosome biogenesis in eukaryotes 3
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 4
cre00710 Carbon fixation by Calvin cycle 3
cre00250 Alanine, aspartate and glutamate metabolism 2
cre00630 Glyoxylate and dicarboxylate metabolism 2
cre01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 6
sbi03040 Spliceosome 2
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 5
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
cit03020 RNA polymerase 2
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03420 Nucleotide excision repair 4
bdi04141 Protein processing in endoplasmic reticulum 4
bdi03040 Spliceosome 2
bdi03082 ATP-dependent chromatin remodeling 2
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00480 Glutathione metabolism 4
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 4
nta04136 Autophagy - other 3
nta03250 Viral life cycle - HIV-1 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834599 816312 100790602 100799891 101248968 101257425 4340047 100273936 103827787 100247042 100257470 7494288 11425339 11442795 123149312 123087873 123410910 107902022 107927880 106375374 5720972 110430776 102586541 102629041 102615265 100828557 107765768 107832376
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