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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G46420   16S rRNA processing protein RimM family 
 ath-r.7   AT5G46420   16S rRNA processing protein RimM family 
 ath-m.9   AT5G46420   16S rRNA processing protein RimM family 
 ath-e.2   AT5G46420   16S rRNA processing protein RimM family 
 ath-m.4.bio   AT5G46420   16S rRNA processing protein RimM family 
 ath-m.4.hor   AT5G46420   16S rRNA processing protein RimM family 
 ath-m.4.lig   AT5G46420   16S rRNA processing protein RimM family 
 ath-m.4.str   AT5G46420   16S rRNA processing protein RimM family 
 ath-m.4.tis   AT5G46420   16S rRNA processing protein RimM family 
 gma-u.5   100802788   uncharacterized LOC100802788 
 gma-u.5   100800702   uncharacterized LOC100800702 
 vvi-u.5   100251997   uncharacterized LOC100251997 
 ppo-u.5   18095282   uncharacterized LOC18095282 
 mtr-u.5   11418018   uncharacterized LOC11418018 
 sly-u.5   101255162   uncharacterized LOC101255162 
 osa-u.5   4339632   uncharacterized LOC4339632 
 zma-u.5   100501868   16S rRNA processing protein RimM family 
 zma-u.5   103637156   ribosome maturation factor RimM 

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Top 50 coexpressed genes to AT5G46420 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G46420 (ath-u.5 coexpression data)

CoexMap"834685"


athAT5G46420 | Entrez gene ID : 834685      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 9 2 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005840 [list] [network] ribosome  (328 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_568663.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 2  (predict for NP_568663.2)
Subcellular
localization
TargetP
chlo 9  (predict for NP_568663.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G46420

.
ath-r.7
for
AT5G46420

.
ath-m.9
for
AT5G46420

.
ath-e.2
for
AT5G46420

.
ath-m.4.bio
for
AT5G46420

.
ath-m.4.hor
for
AT5G46420

.
ath-m.4.lig
for
AT5G46420

.
ath-m.4.str
for
AT5G46420

.
ath-m.4.tis
for
AT5G46420

.
gma-u.5
for
100802788

.
gma-u.5
for
100800702

.
vvi-u.5
for
100251997

.
ppo-u.5
for
18095282

.
mtr-u.5
for
11418018

.
sly-u.5
for
101255162

.
osa-u.5
for
4339632

.
zma-u.5
for
100501868

.
zma-u.5
for
103637156

.


Ortholog ID: 9722
Species ath gma gma sly osa zma zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT5G46420 LOC100800702 LOC100802788 LOC101255162 LOC4339632 LOC100501868 LOC103637156 LOC103827733 LOC100251997 LOC18095282 LOC11418018 LOC123146266 LOC123183148 LOC123450581 LOC107935918 LOC107913147 BNAC07G19140D BNAA06G35980D CHLRE_03g191950v5 LOC8074605 LOC102604214 LOC102610521 LOC100844980 LOC107774356 LOC107825588
Function* 16S rRNA processing protein RimM family uncharacterized LOC100800702 uncharacterized LOC100802788 uncharacterized LOC101255162 uncharacterized LOC4339632 16S rRNA processing protein RimM family ribosome maturation factor RimM uncharacterized LOC103827733 uncharacterized LOC100251997 uncharacterized LOC18095282 uncharacterized LOC11418018 uncharacterized LOC123146266 uncharacterized LOC123183148 uncharacterized LOC123450581 uncharacterized LOC107935918 uncharacterized LOC107913147 uncharacterized BNAC07G19140D uncharacterized BNAA06G35980D uncharacterized protein uncharacterized LOC8074605 uncharacterized LOC102604214 uncharacterized LOC102610521 uncharacterized LOC100844980 uncharacterized LOC107774356 uncharacterized LOC107825588
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma03040 Spliceosome 2
gma04144 Endocytosis 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 3
bra03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
vvi00860 Porphyrin metabolism 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03060 Protein export 2
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834685 100800702 100802788 101255162 4339632 100501868 103637156 103827733 100251997 18095282 11418018 123146266 123183148 123450581 107935918 107913147 106410350 106400664 5718676 8074605 102604214 102610521 100844980 107774356 107825588
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