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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G48790   LOW PSII ACCUMULATION protein (DUF1995) 
 ath-r.7   AT5G48790   LOW PSII ACCUMULATION protein (DUF1995) 
 ath-m.9   AT5G48790   LOW PSII ACCUMULATION protein (DUF1995) 
 ath-e.2   AT5G48790   LOW PSII ACCUMULATION protein (DUF1995) 
 ath-m.4.bio   AT5G48790   LOW PSII ACCUMULATION protein (DUF1995) 
 ath-m.4.hor   AT5G48790   LOW PSII ACCUMULATION protein (DUF1995) 
 ath-m.4.lig   AT5G48790   LOW PSII ACCUMULATION protein (DUF1995) 
 ath-m.4.str   AT5G48790   LOW PSII ACCUMULATION protein (DUF1995) 
 ath-m.4.tis   AT5G48790   LOW PSII ACCUMULATION protein (DUF1995) 
 gma-u.5   100805878   protein LOW PSII ACCUMULATION 3, chloroplastic 
 gma-u.5   100802995   uncharacterized LOC100802995 
 vvi-u.5   100265501   protein LPA3 
 ppo-u.5   7491892   protein LPA3 
 mtr-u.5   11411101   protein LOW PSII ACCUMULATION 3, chloroplastic 
 sly-u.5   101261055   protein LPA3 
 osa-u.5   4328182   protein LPA3 
 zma-u.5   100279074   uncharacterized LOC100279074 

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Top 50 coexpressed genes to AT5G48790 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G48790 (ath-u.5 coexpression data)

CoexMap"834937"


athAT5G48790 | Entrez gene ID : 834937      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 9 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
Protein NP_001332148.1 [sequence] [blastp]
NP_001332149.1 [sequence] [blastp]
NP_568702.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_001332148.1)
chlo 9  (predict for NP_001332149.1)
chlo 9  (predict for NP_568702.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001332148.1)
chlo 9  (predict for NP_001332149.1)
chlo 9  (predict for NP_568702.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G48790

.
ath-r.7
for
AT5G48790

.
ath-m.9
for
AT5G48790

.
ath-e.2
for
AT5G48790

.
ath-m.4.bio
for
AT5G48790

.
ath-m.4.hor
for
AT5G48790

.
ath-m.4.lig
for
AT5G48790

.
ath-m.4.str
for
AT5G48790

.
ath-m.4.tis
for
AT5G48790

.
gma-u.5
for
100805878

.
gma-u.5
for
100802995

.
vvi-u.5
for
100265501

.
ppo-u.5
for
7491892

.
mtr-u.5
for
11411101

.
sly-u.5
for
101261055

.
osa-u.5
for
4328182

.
zma-u.5
for
100279074

.


Ortholog ID: 9151
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol AT5G48790 LOC100802995 LOC100805878 LOC101261055 LOC4328182 LOC100279074 LOC103874988 LOC100265501 LOC7491892 LOC11411101 LOC123136043 LOC123131993 LOC107929449 LOC107900665 LOC106348901 LOC106349015 CHLRE_04g212500v5 LOC8057504 LOC102598188 LOC102607123 LOC102617733 LOC100843789 LOC107796625 LOC107821228
Function* LOW PSII ACCUMULATION protein (DUF1995) uncharacterized LOC100802995 protein LOW PSII ACCUMULATION 3, chloroplastic protein LPA3 protein LPA3 uncharacterized LOC100279074 protein LOW PSII ACCUMULATION 3, chloroplastic protein LPA3 protein LPA3 protein LOW PSII ACCUMULATION 3, chloroplastic protein LPA3 protein LPA3 protein LOW PSII ACCUMULATION 3, chloroplastic protein LOW PSII ACCUMULATION 3, chloroplastic protein LPA3 protein LPA3 uncharacterized protein protein LOW PSII ACCUMULATION 3, chloroplastic uncharacterized LOC102598188 uncharacterized LOC102607123 protein LPA3-like protein LOW PSII ACCUMULATION 3, chloroplastic protein LPA3 protein LPA3-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 3
sly00195 Photosynthesis 2
sly00260 Glycine, serine and threonine metabolism 2
sly00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 4
ghi00910 Nitrogen metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 4
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
ghi00910 Nitrogen metabolism 4
ghi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00860 Porphyrin metabolism 2
bna00260 Glycine, serine and threonine metabolism 2
bna00460 Cyanoamino acid metabolism 2
bna00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01240 Biosynthesis of cofactors 7
bna00630 Glyoxylate and dicarboxylate metabolism 7
bna01200 Carbon metabolism 7
bna00260 Glycine, serine and threonine metabolism 5
bna00460 Cyanoamino acid metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
sbi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00900 Terpenoid backbone biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834937 100802995 100805878 101261055 4328182 100279074 103874988 100265501 7491892 11411101 123136043 123131993 107929449 107900665 106348901 106349015 5724226 8057504 102598188 102607123 102617733 100843789 107796625 107821228
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