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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G53490   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-r.7   AT5G53490   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.9   AT5G53490   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-e.2   AT5G53490   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.bio   AT5G53490   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.hor   AT5G53490   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.lig   AT5G53490   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.str   AT5G53490   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.tis   AT5G53490   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103844824   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 bna-r.1   106371291   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 bna-r.1   106418492   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 ghi-r.1   107924923   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 ghi-r.1   107961857   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 ghi-r.1   107950206   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 cit-r.1   102610037   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 gma-u.5   100801521   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 gma-u.5   100785667   thylakoid lumenal 17.4 kDa protein, chloroplastic-like 
 vvi-u.5   100267488   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 ppo-u.5   7464286   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 mtr-u.5   25491136   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 sly-u.5   101264410   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 sot-r.1   102593902   thylakoid lumenal 17.4 kDa protein, chloroplastic-like 
 nta-r.1   107793983   thylakoid lumenal 17.4 kDa protein, chloroplastic-like 
 nta-r.1   107760084   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 osa-u.5   4349041   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 zma-u.5   100194054   Thylakoid lumenal 17.4 kDa protein chloroplastic 
 tae-r.2   123123318   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 tae-r.2   123047687   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 tae-r.2   123181212   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 hvu-r.1   123433283   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 sbi-r.1   8065201   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 bdi-r.1   100841350   thylakoid lumenal 17.4 kDa protein, chloroplastic 
 cre-r.1   CHLRE_09g404000v5   uncharacterized protein 

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Top 50 coexpressed genes to AT5G53490 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G53490 (ath-u.5 coexpression data)

CoexMap"835431"


athAT5G53490 | Entrez gene ID : 835431      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009543 [list] [network] chloroplast thylakoid lumen  (52 genes)  HDA  
GO:0031977 [list] [network] thylakoid lumen  (69 genes)  HDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005576 [list] [network] extracellular region  (3158 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001190531.1 [sequence] [blastp]
NP_001330392.1 [sequence] [blastp]
NP_200161.2 [sequence] [blastp]
NP_851183.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  E.R. 1,  E.R._vacu 1,  mito 1,  plas 1,  golg 1,  golg_plas 1,  mito_plas 1  (predict for NP_001190531.1)
chlo 6,  mito 1,  vacu 1  (predict for NP_001330392.1)
chlo 7,  mito 1,  vacu 1  (predict for NP_200161.2)
chlo 7,  mito 1,  vacu 1  (predict for NP_851183.1)
Subcellular
localization
TargetP
other 4  (predict for NP_001190531.1)
chlo 7  (predict for NP_001330392.1)
chlo 6  (predict for NP_200161.2)
chlo 6,  mito 3  (predict for NP_851183.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G53490
ath-r.7
for
AT5G53490
ath-m.9
for
AT5G53490
ath-e.2
for
AT5G53490
ath-m.4.bio
for
AT5G53490
ath-m.4.hor
for
AT5G53490
ath-m.4.lig
for
AT5G53490
ath-m.4.str
for
AT5G53490
ath-m.4.tis
for
AT5G53490
bra-r.6
for
103844824
bna-r.1
for
106371291
bna-r.1
for
106418492
ghi-r.1
for
107924923
ghi-r.1
for
107961857
ghi-r.1
for
107950206
cit-r.1
for
102610037
gma-u.5
for
100801521
gma-u.5
for
100785667
vvi-u.5
for
100267488
ppo-u.5
for
7464286
mtr-u.5
for
25491136
sly-u.5
for
101264410
sot-r.1
for
102593902
nta-r.1
for
107793983
nta-r.1
for
107760084
osa-u.5
for
4349041
zma-u.5
for
100194054
tae-r.2
for
123123318
tae-r.2
for
123047687
tae-r.2
for
123181212
hvu-r.1
for
123433283
sbi-r.1
for
8065201
bdi-r.1
for
100841350
cre-r.1
for
CHLRE_09g404000v5


Ortholog ID: 7760
Species ath bra bna bna ghi ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT5G53490 LOC103844824 LOC106371291 LOC106418492 LOC107961857 LOC107930179 LOC107890779 LOC102610037 LOC100801521 LOC100785667 LOC100267488 LOC7464286 LOC25491136 LOC101264410 LOC102593902 LOC107793983 LOC107760084 LOC4349041 LOC100194054 LOC123123318 LOC123047687 LOC123181212 LOC123433283 LOC8065201 LOC100841350 CHLRE_09g404000v5
Function* Tetratricopeptide repeat (TPR)-like superfamily protein thylakoid lumenal 17.4 kDa protein, chloroplastic thylakoid lumenal 17.4 kDa protein, chloroplastic thylakoid lumenal 17.4 kDa protein, chloroplastic thylakoid lumenal 17.4 kDa protein, chloroplastic thylakoid lumenal 17.4 kDa protein, chloroplastic thylakoid lumenal 17.4 kDa protein, chloroplastic thylakoid lumenal 17.4 kDa protein, chloroplastic thylakoid lumenal 17.4 kDa protein, chloroplastic thylakoid lumenal 17.4 kDa protein, chloroplastic-like thylakoid lumenal 17.4 kDa protein, chloroplastic thylakoid lumenal 17.4 kDa protein, chloroplastic thylakoid lumenal 17.4 kDa protein, chloroplastic thylakoid lumenal 17.4 kDa protein, chloroplastic thylakoid lumenal 17.4 kDa protein, chloroplastic-like thylakoid lumenal 17.4 kDa protein, chloroplastic-like thylakoid lumenal 17.4 kDa protein, chloroplastic thylakoid lumenal 17.4 kDa protein, chloroplastic Thylakoid lumenal 17.4 kDa protein chloroplastic thylakoid lumenal 17.4 kDa protein, chloroplastic thylakoid lumenal 17.4 kDa protein, chloroplastic thylakoid lumenal 17.4 kDa protein, chloroplastic thylakoid lumenal 17.4 kDa protein, chloroplastic thylakoid lumenal 17.4 kDa protein, chloroplastic thylakoid lumenal 17.4 kDa protein, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 6
bra00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00630 Glyoxylate and dicarboxylate metabolism 8
bna00710 Carbon fixation by Calvin cycle 8
bna01200 Carbon metabolism 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00630 Glyoxylate and dicarboxylate metabolism 8
bna00710 Carbon fixation by Calvin cycle 8
bna01200 Carbon metabolism 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 2
ghi00196 Photosynthesis - antenna proteins 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 11
cit00196 Photosynthesis - antenna proteins 2
cit00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
vvi00860 Porphyrin metabolism 2
vvi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
nta00750 Vitamin B6 metabolism 2
nta00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
nta00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
tae00860 Porphyrin metabolism 5
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 5
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 5
bdi00630 Glyoxylate and dicarboxylate metabolism 5
bdi00710 Carbon fixation by Calvin cycle 4
bdi01230 Biosynthesis of amino acids 2
bdi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835431 103844824 106371291 106418492 107961857 107930179 107890779 102610037 100801521 100785667 100267488 7464286 25491136 101264410 102593902 107793983 107760084 4349041 100194054 123123318 123047687 123181212 123433283 8065201 100841350 5720757
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