ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT5G57970	DNA glycosylase superfamily protein
ath-r.7	AT5G57970	DNA glycosylase superfamily protein
ath-m.9	AT5G57970	DNA glycosylase superfamily protein
ath-e.2	AT5G57970	DNA glycosylase superfamily protein
ath-m.4.bio	AT5G57970	DNA glycosylase superfamily protein
ath-m.4.hor	AT5G57970	DNA glycosylase superfamily protein
ath-m.4.lig	AT5G57970	DNA glycosylase superfamily protein
ath-m.4.str	AT5G57970	DNA glycosylase superfamily protein
ath-m.4.tis	AT5G57970	DNA glycosylase superfamily protein
ath-u.5	AT1G15970	DNA glycosylase superfamily protein
ath-u.5	AT1G80850	DNA glycosylase superfamily protein
bra-r.6	103832451	DNA-3-methyladenine glycosylase 1
bra-r.6	103836010	probable GMP synthase [glutamine-hydrolyzing]
bra-r.6	103830461	probable GMP synthase [glutamine-hydrolyzing]
bna-r.1	106353385	DNA-3-methyladenine glycosylase 1-like
bna-r.1	106402818	DNA-3-methyladenine glycosylase 1
bna-r.1	106430770	DNA-3-methyladenine glycosylase 1-like
ghi-r.1	121229252	probable GMP synthase [glutamine-hydrolyzing]
ghi-r.1	107961663	probable GMP synthase [glutamine-hydrolyzing]
ghi-r.1	107906887	DNA-3-methyladenine glycosylase 1
cit-r.1	102607933	uncharacterized LOC102607933
gma-u.5	100785912	probable GMP synthase [glutamine-hydrolyzing]
gma-u.5	100801026	probable GMP synthase [glutamine-hydrolyzing]
gma-u.5	100805836	probable GMP synthase [glutamine-hydrolyzing]
vvi-u.5	100267363	uncharacterized LOC100267363
vvi-u.5	100258710	uncharacterized LOC100258710
ppo-u.5	7465959	uncharacterized LOC7465959
ppo-u.5	7493231	uncharacterized LOC7493231
ppo-u.5	7493396	uncharacterized LOC7493396
mtr-u.5	11433926	probable GMP synthase [glutamine-hydrolyzing]
mtr-u.5	11439558	probable GMP synthase [glutamine-hydrolyzing]
sly-u.5	101247118	uncharacterized LOC101247118
sly-u.5	101267869	uncharacterized LOC101267869
sot-r.1	102595001	probable GMP synthase [glutamine-hydrolyzing]
sot-r.1	102594169	uncharacterized LOC102594169
nta-r.1	107801000	uncharacterized LOC107801000
nta-r.1	107780907	uncharacterized LOC107780907
nta-r.1	107801558	uncharacterized LOC107801558
osa-u.5	4341682	uncharacterized LOC4341682
osa-u.5	4336309	uncharacterized LOC4336309
zma-u.5	103632764	probable GMP synthase [glutamine-hydrolyzing]
zma-u.5	103641812	DNA glycosylase superfamily protein
zma-u.5	100273848	DNA-3-methyladenine glycosylase I
tae-r.2	123053805	probable GMP synthase [glutamine-hydrolyzing]
tae-r.2	123045938	probable GMP synthase [glutamine-hydrolyzing]
hvu-r.1	123427150	probable GMP synthase [glutamine-hydrolyzing]
hvu-r.1	123410964	uncharacterized LOC123410964
sbi-r.1	8075892	probable GMP synthase [glutamine-hydrolyzing]
sbi-r.1	8058425	probable GMP synthase [glutamine-hydrolyzing]
bdi-r.1	100824759	uncharacterized LOC100824759
bdi-r.1	100841287	uncharacterized LOC100841287

Top 50 coexpressed genes to AT5G57970 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT5G57970 (ath-u.5 coexpression data)

CoexMap"835908"

[Cytoscape]

Annotation

functional annotation

KEGG

ath03410 [list] [network] Base excision repair (50 genes)

GO BP

GO:0006284 [list] [network] base-excision repair

(21 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

GO:0008725 [list] [network] DNA-3-methyladenine glycosylase activity

(8 genes)

IEA

Protein

NP_001032091.1 [sequence] [blastp]
NP_200605.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 2, mito 1, plas 1, pero 1, cysk 1, cysk_plas 1, mito_plas 1	(predict for NP_001032091.1)
nucl 5, cyto 2, mito 1, plas 1, pero 1, cysk 1, cysk_plas 1, mito_plas 1	(predict for NP_200605.1)

Subcellular
localization
TargetP

chlo 7, other 3	(predict for NP_001032091.1)
chlo 7, other 3	(predict for NP_200605.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT5G57970	ath-r.7 for AT5G57970	ath-m.9 for AT5G57970	ath-e.2 for AT5G57970	ath-m.4.bio for AT5G57970	ath-m.4.hor for AT5G57970	ath-m.4.lig for AT5G57970	ath-m.4.str for AT5G57970	ath-m.4.tis for AT5G57970	ath-u.5 for AT1G15970	ath-u.5 for AT1G80850	bra-r.6 for 103832451	bra-r.6 for 103836010	bra-r.6 for 103830461	bna-r.1 for 106353385	bna-r.1 for 106402818	bna-r.1 for 106430770	ghi-r.1 for 121229252	ghi-r.1 for 107961663	ghi-r.1 for 107906887	cit-r.1 for 102607933	gma-u.5 for 100785912	gma-u.5 for 100801026	gma-u.5 for 100805836	vvi-u.5 for 100267363	vvi-u.5 for 100258710	ppo-u.5 for 7465959	ppo-u.5 for 7493231	ppo-u.5 for 7493396	mtr-u.5 for 11433926	mtr-u.5 for 11439558	sly-u.5 for 101247118	sly-u.5 for 101267869	sot-r.1 for 102595001	sot-r.1 for 102594169	nta-r.1 for 107801000	nta-r.1 for 107780907	nta-r.1 for 107801558	osa-u.5 for 4341682	osa-u.5 for 4336309	zma-u.5 for 103632764	zma-u.5 for 103641812	zma-u.5 for 100273848	tae-r.2 for 123053805	tae-r.2 for 123045938	hvu-r.1 for 123427150	hvu-r.1 for 123410964	sbi-r.1 for 8075892	sbi-r.1 for 8058425	bdi-r.1 for 100824759	bdi-r.1 for 100841287

Ortholog

Ortholog ID: 2512

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

DNA glycosylase superfamily protein

DNA-3-methyladenine glycosylase 1

probable GMP synthase [glutamine-hydrolyzing]

DNA-3-methyladenine glycosylase 1

DNA-3-methyladenine glycosylase 1-like

uncharacterized LOC106387579

probable GMP synthase [glutamine-hydrolyzing]

DNA-3-methyladenine glycosylase 1

uncharacterized LOC107888426

uncharacterized LOC102607933

probable GMP synthase [glutamine-hydrolyzing]

uncharacterized LOC100814780

probable GMP synthase [glutamine-hydrolyzing]

uncharacterized LOC100267363

uncharacterized LOC100258710

uncharacterized LOC7465959

uncharacterized LOC7493231

uncharacterized LOC7493396

probable GMP synthase [glutamine-hydrolyzing]

uncharacterized LOC101247118

uncharacterized LOC101267869

probable GMP synthase [glutamine-hydrolyzing]

uncharacterized LOC102594169

uncharacterized LOC107801000

uncharacterized LOC107780907

uncharacterized LOC107788881

uncharacterized LOC4341682

uncharacterized LOC4336309

probable GMP synthase [glutamine-hydrolyzing]

DNA-3-methyladenine glycosylase I

DNA glycosylase superfamily protein

probable GMP synthase [glutamine-hydrolyzing]

uncharacterized LOC123410964

probable GMP synthase [glutamine-hydrolyzing]

uncharacterized LOC100824759

uncharacterized LOC100841287

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00010	Glycolysis / Gluconeogenesis	3
ath01200	Carbon metabolism	3
ath01240	Biosynthesis of cofactors	2
ath00030	Pentose phosphate pathway	2
ath00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03410	Base excision repair	4
bna00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03410	Base excision repair	4
bna00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03410	Base excision repair	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03410	Base excision repair	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03410	Base excision repair	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03410	Base excision repair	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00510	N-Glycan biosynthesis	2
cit00513	Various types of N-glycan biosynthesis	2
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2
gma03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03410	Base excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4
nta03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2
nta03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03410	Base excision repair	3
tae03015	mRNA surveillance pathway	2
tae04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01240	Biosynthesis of cofactors	2
hvu03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04145	Phagosome	2
hvu04517	IgSF CAM signaling	2
hvu04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	4
sbi00270	Cysteine and methionine metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

835908

838167

844424

103832451

103836010

103830461

106402818

106430770

106387579

107961663

107906887

107888426

102607933

100801026

100814780

100783263

100267363

100258710

7465959

7493231

7493396

11433926

11439558

101247118

101267869

102595001

102594169

107801000

107780907

107788881

4341682

4336309

103632764

100273848

100216672

123045938

123427150

123410964

8075892

8058425

100824759

100841287

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	3	3	3	1	3	2	3	2	2	2	3	2	3	2	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G57970 (ath-u.5 coexpression data)

Top 50 enrichment test to AT5G57970 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**