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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G63080   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 
 ath-r.7   AT5G63080   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 
 ath-m.9   AT5G63080   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 
 ath-e.2   AT5G63080   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 
 ath-m.4.bio   AT5G63080   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 
 ath-m.4.hor   AT5G63080   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 
 ath-m.4.lig   AT5G63080   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 
 ath-m.4.str   AT5G63080   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 
 ath-m.4.tis   AT5G63080   2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 
 bra-r.6   103837450   2-oxoglutarate and iron-dependent oxygenase JMJD4 
 bna-r.1   106366181   2-oxoglutarate and iron-dependent oxygenase JMJD4 
 ghi-r.1   107904757   2-oxoglutarate and iron-dependent oxygenase JMJD4 
 ghi-r.1   121224457   2-oxoglutarate and iron-dependent oxygenase JMJD4 
 cit-r.1   102609392   arginine-specific demethylase JMJ20 
 gma-u.5   100803814   2-oxoglutarate and iron-dependent oxygenase JMJD4 
 vvi-u.5   100251987   arginine-specific demethylase JMJ20 
 ppo-u.5   7457758   arginine-specific demethylase JMJ20 
 mtr-u.5   11438488   2-oxoglutarate and iron-dependent oxygenase JMJD4 
 sly-u.5   JJH1   anti-PCD protein-like 
 sot-r.1   102599246   jmjC domain-containing protein 4 
 nta-r.1   107811587   arginine-specific demethylase JMJ20 
 nta-r.1   107829762   arginine-specific demethylase JMJ20 
 osa-u.5   4326179   arginine-specific demethylase JMJ20 
 zma-u.5   103635264   2-oxoglutarate and iron-dependent oxygenase JMJD4 
 tae-r.2   123078274   2-oxoglutarate and iron-dependent oxygenase JMJD4 
 tae-r.2   123069813   2-oxoglutarate and iron-dependent oxygenase JMJD4 
 tae-r.2   123061276   2-oxoglutarate and iron-dependent oxygenase JMJD4 
 hvu-r.1   123443727   2-oxoglutarate and iron-dependent oxygenase JMJD4 
 sbi-r.1   8075464   jmjC domain-containing protein 4 
 bdi-r.1   100846702   jmjC domain-containing protein 4 
 cre-r.1   CHLRE_03g177007v5   uncharacterized protein 

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Top 50 coexpressed genes to AT5G63080 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G63080 (ath-u.5 coexpression data)

CoexMap"836428"


athAT5G63080 | Entrez gene ID : 836428      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 1 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010030 [list] [network] positive regulation of seed germination  (25 genes)  IGI IMP  
GO:0010099 [list] [network] regulation of photomorphogenesis  (41 genes)  IMP  
GO:0010476 [list] [network] gibberellin mediated signaling pathway  (49 genes)  IMP  
GO:0010114 [list] [network] response to red light  (73 genes)  IEP IMP  
GO:0040029 [list] [network] epigenetic regulation of gene expression  (174 genes)  IDA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0033746 [list] [network] histone H3R2 demethylase activity  (1 genes)  IDA  
GO:0033749 [list] [network] histone H4R3 demethylase activity  (1 genes)  IDA IMP  
GO:0000987 [list] [network] cis-regulatory region sequence-specific DNA binding  (55 genes)  IDA  
Protein NP_201113.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for NP_201113.2)
Subcellular
localization
TargetP
other 8  (predict for NP_201113.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G63080
ath-r.7
for
AT5G63080
ath-m.9
for
AT5G63080
ath-e.2
for
AT5G63080
ath-m.4.bio
for
AT5G63080
ath-m.4.hor
for
AT5G63080
ath-m.4.lig
for
AT5G63080
ath-m.4.str
for
AT5G63080
ath-m.4.tis
for
AT5G63080
bra-r.6
for
103837450
bna-r.1
for
106366181
ghi-r.1
for
107904757
ghi-r.1
for
121224457
cit-r.1
for
102609392
gma-u.5
for
100803814
vvi-u.5
for
100251987
ppo-u.5
for
7457758
mtr-u.5
for
11438488
sly-u.5
for
JJH1
sot-r.1
for
102599246
nta-r.1
for
107811587
nta-r.1
for
107829762
osa-u.5
for
4326179
zma-u.5
for
103635264
tae-r.2
for
123078274
tae-r.2
for
123069813
tae-r.2
for
123061276
hvu-r.1
for
123443727
sbi-r.1
for
8075464
bdi-r.1
for
100846702
cre-r.1
for
CHLRE_03g177007v5


Ortholog ID: 11015
Species ath bra bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT5G63080 LOC103837450 LOC106366181 LOC107904757 LOC121224457 LOC102609392 LOC100803814 LOC100251987 LOC7457758 LOC11438488 JJH1 LOC102599246 LOC107811587 LOC107829762 LOC4326179 LOC103635264 LOC123078274 LOC123069813 LOC123061276 LOC123443727 LOC8075464 LOC100846702 CHLRE_03g177007v5
Function* 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 2-oxoglutarate and iron-dependent oxygenase JMJD4 2-oxoglutarate and iron-dependent oxygenase JMJD4 2-oxoglutarate and iron-dependent oxygenase JMJD4 2-oxoglutarate and iron-dependent oxygenase JMJD4 arginine-specific demethylase JMJ20 2-oxoglutarate and iron-dependent oxygenase JMJD4 arginine-specific demethylase JMJ20 arginine-specific demethylase JMJ20 2-oxoglutarate and iron-dependent oxygenase JMJD4 anti-PCD protein-like jmjC domain-containing protein 4 arginine-specific demethylase JMJ20 arginine-specific demethylase JMJ20 arginine-specific demethylase JMJ20 2-oxoglutarate and iron-dependent oxygenase JMJD4 2-oxoglutarate and iron-dependent oxygenase JMJD4 2-oxoglutarate and iron-dependent oxygenase JMJD4 2-oxoglutarate and iron-dependent oxygenase JMJD4 2-oxoglutarate and iron-dependent oxygenase JMJD4 jmjC domain-containing protein 4 jmjC domain-containing protein 4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
bra00190 Oxidative phosphorylation 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00510 N-Glycan biosynthesis 2
cit00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00531 Glycosaminoglycan degradation 2
nta04142 Lysosome 2
nta00260 Glycine, serine and threonine metabolism 2
nta00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
osa03040 Spliceosome 2
osa04130 SNARE interactions in vesicular transport 2
osa04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00040 Pentose and glucuronate interconversions 4
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836428 103837450 106366181 107904757 121224457 102609392 100803814 100251987 7457758 11438488 100037726 102599246 107811587 107829762 4326179 103635264 123078274 123069813 123061276 123443727 8075464 100846702 5728838
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