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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CYCD4;1   CYCLIN D4;1 
 ath-r.7   CYCD4;1   CYCLIN D4;1 
 ath-m.9   CYCD4;1   CYCLIN D4;1 
 ath-e.2   CYCD4;1   CYCLIN D4;1 
 ath-m.4.bio   CYCD4;1   CYCLIN D4;1 
 ath-m.4.hor   CYCD4;1   CYCLIN D4;1 
 ath-m.4.lig   CYCD4;1   CYCLIN D4;1 
 ath-m.4.str   CYCD4;1   CYCLIN D4;1 
 ath-m.4.tis   CYCD4;1   CYCLIN D4;1 
 ath-u.5   CYCD2;1   Cyclin D2;1 
 ath-u.5   CYCD1;1   CYCLIN D1;1 
 gma-u.5   100818190   cyclin-D1-1 
 gma-u.5   100811122   cyclin-D3-1 
 vvi-u.5   100251483   cyclin-D2-1 
 vvi-u.5   100854424   cyclin-D5-1 
 ppo-u.5   7472682   cyclin-D3-1 
 ppo-u.5   7476401   cyclin-D3-3 
 mtr-u.5   11446144   cyclin-D4-2 
 mtr-u.5   11405645   cyclin-D1-1 
 sly-u.5   cycd3c2   D-type cyclin-2 
 sly-u.5   cycd3c3   D-type cyclin-3 
 osa-u.5   9272445   cyclin-D1-2 
 osa-u.5   4331985   cyclin-D5-3-like 
 zma-u.5   100283538   cyclin delta-2 
 zma-u.5   100285876   cyclin delta-2 

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Top 50 coexpressed genes to CYCD4;1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CYCD4;1 (ath-u.5 coexpression data)

CoexMap"836667"


athCYCD4;1 | Entrez gene ID : 836667      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 11 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010440 [list] [network] stomatal lineage progression  (24 genes)  IMP  
GO:0009744 [list] [network] response to sucrose  (79 genes)  IEP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001190619.1 [sequence] [blastp]
NP_001190620.1 [sequence] [blastp]
NP_001331197.1 [sequence] [blastp]
NP_201345.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 3,  golg 3,  nucl 1,  cyto_pero 1,  cyto_E.R. 1  (predict for NP_001190619.1)
nucl 4,  cyto 3,  golg 2,  nucl_plas 2  (predict for NP_001190620.1)
nucl 3,  cyto 3,  golg 3,  cyto_nucl 3  (predict for NP_001331197.1)
nucl 3,  cyto 3,  golg 3,  cyto_nucl 3  (predict for NP_201345.1)
Subcellular
localization
TargetP
other 8,  scret 3  (predict for NP_001190619.1)
other 8  (predict for NP_001190620.1)
other 8,  scret 3  (predict for NP_001331197.1)
other 8,  scret 3  (predict for NP_201345.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CYCD4;1
ath-r.7
for
CYCD4;1
ath-m.9
for
CYCD4;1
ath-e.2
for
CYCD4;1
ath-m.4.bio
for
CYCD4;1
ath-m.4.hor
for
CYCD4;1
ath-m.4.lig
for
CYCD4;1
ath-m.4.str
for
CYCD4;1
ath-m.4.tis
for
CYCD4;1
ath-u.5
for
CYCD2;1
ath-u.5
for
CYCD1;1
gma-u.5
for
100818190
gma-u.5
for
100811122
vvi-u.5
for
100251483
vvi-u.5
for
100854424
ppo-u.5
for
7472682
ppo-u.5
for
7476401
mtr-u.5
for
11446144
mtr-u.5
for
11405645
sly-u.5
for
cycd3c2
sly-u.5
for
cycd3c3
osa-u.5
for
9272445
osa-u.5
for
4331985
zma-u.5
for
100283538
zma-u.5
for
100285876


Ortholog ID: 67
Species ath ath bra bra bna bna ghi ghi cit cit gma gma vvi vvi ppo ppo mtr sly sot nta nta osa zma zma tae hvu hvu sbi bdi bdi cre cre
Symbol CYCD4;1 CYCD1;1 LOC103829523 LOC103862565 LOC106417667 LOC106402828 LOC107899915 LOC107932943 LOC102606606 LOC102630732 LOC100804102 LOC100807175 LOC100247298 LOC100255261 LOC18104838 LOC7490056 LOC11433995 LOC101248769 LOC102583812 LOC107782163 LOC107776537 LOC4340499 LOC100273934 LOC103647502 LOC123052052 LOC123451148 LOC123398931 LOC8078902 LOC100832008 LOC100841255 CHLRE_11g467772v5 CHLRE_06g284350v5
Function* CYCLIN D4;1 CYCLIN D1;1 cyclin-D3-2 cyclin-D5-1 cyclin-D4-1-like cyclin-D3-3 cyclin-D4-2 cyclin-D3-3 cyclin-D5-1 cyclin-D4-1-like cyclin-D3-1-like cyclin-D3-3 cyclin-D4-2 cyclin-D1-1 cyclin-D3-1 cyclin-D3-1 cyclin-D5-1 cyclin-D2-1 cyclin-D3-3-like cyclin-D3-2 cyclin-D4-1-like cyclin-D3-1-like uncharacterized LOC100273934 cyclin-D4-1 cyclin-D2-2 cyclin-D5-1-like cyclin-D4-1-like cyclin-D3-1 cyclin-D5-3 cyclin-D4-2 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03420 Nucleotide excision repair 3
ath03430 Mismatch repair 3
ath03440 Homologous recombination 3
ath03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00010 Glycolysis / Gluconeogenesis 2
bra00500 Starch and sucrose metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna00270 Cysteine and methionine metabolism 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00010 Glycolysis / Gluconeogenesis 2
vvi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00944 Flavone and flavonol biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 7
sot04075 Plant hormone signal transduction 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00100 Steroid biosynthesis 5
nta04145 Phagosome 4
nta04517 IgSF CAM signaling 4
nta04814 Motor proteins 4
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00053 Ascorbate and aldarate metabolism 3
nta00520 Amino sugar and nucleotide sugar metabolism 3
nta01240 Biosynthesis of cofactors 3
nta01250 Biosynthesis of nucleotide sugars 3
nta00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 8
sbi03030 DNA replication 5
sbi04145 Phagosome 3
sbi03060 Protein export 3
sbi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03013 Nucleocytoplasmic transport 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836667 843357 103829523 103862565 106417667 106402828 107899915 107932943 102606606 102630732 100804102 100807175 100247298 100255261 18104838 7490056 11433995 101248769 102583812 107782163 107776537 4340499 100273934 103647502 123052052 123451148 123398931 8078902 100832008 100841255 5725073 5720978
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