ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	PUB49	plant U-box 49
ath-r.7	PUB49	plant U-box 49
ath-m.9	PUB49	plant U-box 49
ath-e.2	PUB49	plant U-box 49
ath-m.4.bio	PUB49	plant U-box 49
ath-m.4.hor	PUB49	plant U-box 49
ath-m.4.lig	PUB49	plant U-box 49
ath-m.4.str	PUB49	plant U-box 49
ath-m.4.tis	PUB49	plant U-box 49
gma-u.5	CYP18	peptidyl-prolyl cis-trans isomerase CYP18
gma-u.5	CYP19	peptidyl-prolyl cis-trans isomerase CYP19
vvi-u.5	100241654	peptidyl-prolyl cis-trans isomerase CYP65
ppo-u.5	7489779	peptidyl-prolyl cis-trans isomerase CYP65
mtr-u.5	11433994	peptidyl-prolyl cis-trans isomerase CYP65
sly-u.5	101261768	peptidyl-prolyl cis-trans isomerase CYP65
osa-u.5	4331972	peptidyl-prolyl cis-trans isomerase CYP65
zma-u.5	103632256	peptidyl-prolyl cis-trans isomerase CYP65

Annotation

functional annotation

KEGG

ath04120 [list] [network] Ubiquitin mediated proteolysis (162 genes)

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

GO:0003755 [list] [network] peptidyl-prolyl cis-trans isomerase activity	(32 genes)	IEA
GO:0004842 [list] [network] ubiquitin-protein transferase activity	(268 genes)	IEA

Protein

NP_201554.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 3, cysk 1, cyto_E.R. 1, cyto_plas 1

(predict for NP_201554.1)

Subcellular
localization
TargetP

other 9

(predict for NP_201554.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for PUB49	ath-r.7 for PUB49	ath-m.9 for PUB49	ath-e.2 for PUB49	ath-m.4.bio for PUB49	ath-m.4.hor for PUB49	ath-m.4.lig for PUB49	ath-m.4.str for PUB49	ath-m.4.tis for PUB49	gma-u.5 for CYP18	gma-u.5 for CYP19	vvi-u.5 for 100241654	ppo-u.5 for 7489779	mtr-u.5 for 11433994	sly-u.5 for 101261768	osa-u.5 for 4331972	zma-u.5 for 103632256

Ortholog

Ortholog ID: 11027

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

PUB49

CYP18

CYP19

Function^*

plant U-box 49

peptidyl-prolyl cis-trans isomerase CYP65

peptidyl-prolyl cis-trans isomerase CYP18

peptidyl-prolyl cis-trans isomerase CYP19

peptidyl-prolyl cis-trans isomerase CYP65

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	3
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	6
bna00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	3
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00350	Tyrosine metabolism	2
gma00950	Isoquinoline alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	3
sot04120	Ubiquitin mediated proteolysis	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	3
nta03008	Ribosome biogenesis in eukaryotes	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	3
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3
tae03040	Spliceosome	3
tae00620	Pyruvate metabolism	2
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00564	Glycerophospholipid metabolism	2
sbi00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	5
cre04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

836889

103874045

106443796

107924431

107945461

102622401

100785814

100819923

100241654

7489779

11433994

101261768

102593973

107793942

107801136

4331972

103632256

123098370

123093091

123449409

8054237

100828731

5724113

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to PUB49 (ath-u.5 coexpression data)

Top 50 enrichment test to PUB49 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	9	2	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to PUB49 (ath-u.5 coexpression data)

Top 50 enrichment test to PUB49 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**