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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   HYL1   dsRNA-binding domain-like superfamily protein 
 ath-r.7   HYL1   dsRNA-binding domain-like superfamily protein 
 ath-m.9   HYL1   dsRNA-binding domain-like superfamily protein 
 ath-e.2   HYL1   dsRNA-binding domain-like superfamily protein 
 ath-m.4.bio   HYL1   dsRNA-binding domain-like superfamily protein 
 ath-m.4.hor   HYL1   dsRNA-binding domain-like superfamily protein 
 ath-m.4.lig   HYL1   dsRNA-binding domain-like superfamily protein 
 ath-m.4.str   HYL1   dsRNA-binding domain-like superfamily protein 
 ath-m.4.tis   HYL1   dsRNA-binding domain-like superfamily protein 
 bra-r.6   103871744   double-stranded RNA-binding protein 1 
 bra-r.6   103836317   double-stranded RNA-binding protein 1 
 bna-r.1   106453140   double-stranded RNA-binding protein 1 
 bna-r.1   106351177   double-stranded RNA-binding protein 1-like 
 bna-r.1   106397415   double-stranded RNA-binding protein 1 
 ghi-r.1   107905150   double-stranded RNA-binding protein 1 
 ghi-r.1   107942931   double-stranded RNA-binding protein 1 
 ghi-r.1   107957827   double-stranded RNA-binding protein 1 
 cit-r.1   102616183   double-stranded RNA-binding protein 1 
 gma-u.5   100806833   double-stranded RNA-binding protein 1 
 gma-u.5   100782651   double-stranded RNA-binding protein 1 
 vvi-u.5   100243781   double-stranded RNA-binding protein 1-like 
 ppo-u.5   7468848   double-stranded RNA-binding protein 1 
 ppo-u.5   7467230   double-stranded RNA-binding protein 1 
 mtr-u.5   11432283   double-stranded RNA-binding protein 1 
 sly-u.5   101257657   double-stranded RNA-binding protein 6 
 sot-r.1   102603097   double-stranded RNA-binding protein 1-like 
 nta-r.1   107803960   double-stranded RNA-binding protein 1-like 
 nta-r.1   107794992   double-stranded RNA-binding protein 1 
 osa-u.5   4349575   double-stranded RNA-binding protein 7-like 
 zma-u.5   100284085   uncharacterized LOC100284085 
 tae-r.2   123103189   double-stranded RNA-binding protein 8 
 hvu-r.1   123399981   double-stranded RNA-binding protein 8-like 
 sbi-r.1   8055517   double-stranded RNA-binding protein 8 
 bdi-r.1   100844921   double-stranded RNA-binding protein 8 

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Top 50 coexpressed genes to HYL1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HYL1 (ath-u.5 coexpression data)

CoexMap"837498"


athHYL1 | Entrez gene ID : 837498      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 2 1 2 1 1 1 2 1 1 1 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031054 [list] [network] pre-miRNA processing  (2 genes)  IMP  
GO:0010589 [list] [network] leaf proximal/distal pattern formation  (4 genes)  IMP  
GO:0035279 [list] [network] miRNA-mediated gene silencing by mRNA destabilization  (6 genes)  IMP  
GO:0042659 [list] [network] regulation of cell fate specification  (13 genes)  IGI  
GO:0010267 [list] [network] ta-siRNA processing  (15 genes)  IMP  
GO:0010305 [list] [network] leaf vascular tissue pattern formation  (29 genes)  IMP  
GO:0035196 [list] [network] miRNA processing  (30 genes)  IMP  
GO:0009735 [list] [network] response to cytokinin  (124 genes)  IMP  
GO:0009733 [list] [network] response to auxin  (344 genes)  IMP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IMP  
GO CC
GO:0010445 [list] [network] nuclear dicing body  (7 genes)  IDA  
GO:0015030 [list] [network] Cajal body  (12 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0035198 [list] [network] miRNA binding  (11 genes)  IDA  
GO:0003725 [list] [network] double-stranded RNA binding  (14 genes)  IDA  
GO:0042802 [list] [network] identical protein binding  (414 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001321280.1 [sequence] [blastp]
NP_563850.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 1,  cyto_nucl 1,  nucl 1,  mito 1,  pero 1  (predict for NP_001321280.1)
chlo 4,  nucl 1,  cyto_nucl 1,  mito 1,  cyto 1,  pero 1,  cysk 1,  cyto_mito 1,  mito_plas 1  (predict for NP_563850.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001321280.1)
other 7  (predict for NP_563850.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
HYL1
ath-r.7
for
HYL1
ath-m.9
for
HYL1
ath-e.2
for
HYL1
ath-m.4.bio
for
HYL1
ath-m.4.hor
for
HYL1
ath-m.4.lig
for
HYL1
ath-m.4.str
for
HYL1
ath-m.4.tis
for
HYL1
bra-r.6
for
103871744
bra-r.6
for
103836317
bna-r.1
for
106453140
bna-r.1
for
106351177
bna-r.1
for
106397415
ghi-r.1
for
107905150
ghi-r.1
for
107942931
ghi-r.1
for
107957827
cit-r.1
for
102616183
gma-u.5
for
100806833
gma-u.5
for
100782651
vvi-u.5
for
100243781
ppo-u.5
for
7468848
ppo-u.5
for
7467230
mtr-u.5
for
11432283
sly-u.5
for
101257657
sot-r.1
for
102603097
nta-r.1
for
107803960
nta-r.1
for
107794992
osa-u.5
for
4349575
zma-u.5
for
100284085
tae-r.2
for
123103189
hvu-r.1
for
123399981
sbi-r.1
for
8055517
bdi-r.1
for
100844921


Ortholog ID: 6396
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae hvu sbi bdi
Symbol HYL1 LOC103871744 LOC103836317 LOC106453140 LOC106351177 LOC106362373 LOC107905150 LOC107942931 LOC107957827 LOC102616183 LOC100806833 LOC100782651 LOC100243781 LOC7468848 LOC7467230 LOC11432283 LOC101257657 LOC102603097 LOC107803960 LOC107794992 LOC4349575 LOC100284085 LOC123103189 LOC123399981 LOC8055517 LOC100844921
Function* dsRNA-binding domain-like superfamily protein double-stranded RNA-binding protein 1 double-stranded RNA-binding protein 1 double-stranded RNA-binding protein 1 double-stranded RNA-binding protein 1-like double-stranded RNA-binding protein 1 double-stranded RNA-binding protein 1 double-stranded RNA-binding protein 1 double-stranded RNA-binding protein 1 double-stranded RNA-binding protein 1 double-stranded RNA-binding protein 1 double-stranded RNA-binding protein 1 double-stranded RNA-binding protein 1-like double-stranded RNA-binding protein 1 double-stranded RNA-binding protein 1 double-stranded RNA-binding protein 1 double-stranded RNA-binding protein 6 double-stranded RNA-binding protein 1-like double-stranded RNA-binding protein 1-like double-stranded RNA-binding protein 1 double-stranded RNA-binding protein 7-like uncharacterized LOC100284085 double-stranded RNA-binding protein 8 double-stranded RNA-binding protein 8-like double-stranded RNA-binding protein 8 double-stranded RNA-binding protein 8
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03440 Homologous recombination 2
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
ghi04626 Plant-pathogen interaction 6
ghi04144 Endocytosis 2
ghi04016 MAPK signaling pathway - plant 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 3
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
ghi04626 Plant-pathogen interaction 6
ghi04144 Endocytosis 2
ghi04016 MAPK signaling pathway - plant 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03010 Ribosome 3
sot04141 Protein processing in endoplasmic reticulum 2
sot03013 Nucleocytoplasmic transport 2
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 4
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 3
hvu03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837498 103871744 103836317 106453140 106351177 106362373 107905150 107942931 107957827 102616183 100806833 100782651 100243781 7468848 7467230 11432283 101257657 102603097 107803960 107794992 4349575 100284085 123103189 123399981 8055517 100844921
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