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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CLP2   CLP protease proteolytic subunit 2 
 ath-r.7   CLP2   CLP protease proteolytic subunit 2 
 ath-m.9   CLP2   CLP protease proteolytic subunit 2 
 ath-e.2   CLP2   CLP protease proteolytic subunit 2 
 ath-m.4.bio   CLP2   CLP protease proteolytic subunit 2 
 ath-m.4.hor   CLP2   CLP protease proteolytic subunit 2 
 ath-m.4.lig   CLP2   CLP protease proteolytic subunit 2 
 ath-m.4.str   CLP2   CLP protease proteolytic subunit 2 
 ath-m.4.tis   CLP2   CLP protease proteolytic subunit 2 
 bra-r.6   103843128   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 bra-r.6   103872006   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 bna-r.1   106416284   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 bna-r.1   111206485   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 bna-r.1   106402160   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 ghi-r.1   107946968   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 ghi-r.1   107936380   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 ghi-r.1   107941637   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 cit-r.1   102612769   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 gma-u.5   100800113   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 gma-u.5   100793679   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 vvi-u.5   100256891   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 ppo-u.5   18094418   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 mtr-u.5   11407134   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 sly-u.5   101261350   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 sot-r.1   102604367   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 nta-r.1   107782632   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 nta-r.1   107774235   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 osa-u.5   4340044   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 zma-u.5   100125655   uncharacterized LOC100125655 
 tae-r.2   123167378   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 tae-r.2   123150475   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 tae-r.2   123087871   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 hvu-r.1   123408852   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 sbi-r.1   110431214   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 bdi-r.1   100834344   ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 
 cre-r.1   CHLRE_16g682900v5   uncharacterized protein 

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Top 50 coexpressed genes to CLP2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CLP2 (ath-u.5 coexpression data)

CoexMap"837797"


athCLP2 | Entrez gene ID : 837797      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IMP  
GO CC
GO:0009840 [list] [network] chloroplastic endopeptidase Clp complex  (8 genes)  IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  IDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA IDA  
GO:0005576 [list] [network] extracellular region  (3158 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
Protein NP_563907.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_563907.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_563907.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CLP2
ath-r.7
for
CLP2
ath-m.9
for
CLP2
ath-e.2
for
CLP2
ath-m.4.bio
for
CLP2
ath-m.4.hor
for
CLP2
ath-m.4.lig
for
CLP2
ath-m.4.str
for
CLP2
ath-m.4.tis
for
CLP2
bra-r.6
for
103843128
bra-r.6
for
103872006
bna-r.1
for
106416284
bna-r.1
for
111206485
bna-r.1
for
106402160
ghi-r.1
for
107946968
ghi-r.1
for
107936380
ghi-r.1
for
107941637
cit-r.1
for
102612769
gma-u.5
for
100800113
gma-u.5
for
100793679
vvi-u.5
for
100256891
ppo-u.5
for
18094418
mtr-u.5
for
11407134
sly-u.5
for
101261350
sot-r.1
for
102604367
nta-r.1
for
107782632
nta-r.1
for
107774235
osa-u.5
for
4340044
zma-u.5
for
100125655
tae-r.2
for
123167378
tae-r.2
for
123150475
tae-r.2
for
123087871
hvu-r.1
for
123408852
sbi-r.1
for
110431214
bdi-r.1
for
100834344
cre-r.1
for
CHLRE_16g682900v5


Ortholog ID: 7795
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol CLP2 LOC103843128 LOC103872006 LOC111206485 LOC106402160 LOC106445582 LOC107946968 LOC107936380 LOC107941637 LOC102612769 LOC100800113 LOC100793679 LOC100256891 LOC18094418 LOC11407134 LOC101261350 LOC102604367 LOC107782632 LOC107774235 LOC4340044 LOC100125655 LOC123167378 LOC123150475 LOC123087871 LOC123408852 LOC110431214 LOC100834344 CHLRE_16g682900v5
Function* CLP protease proteolytic subunit 2 ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic uncharacterized LOC100125655 ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00480 Glutathione metabolism 2
ath00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 11
bra03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00730 Thiamine metabolism 2
ghi00900 Terpenoid backbone biosynthesis 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 15
gma00860 Porphyrin metabolism 2
gma00970 Aminoacyl-tRNA biosynthesis 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00053 Ascorbate and aldarate metabolism 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 9
sot00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 2
nta00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 2
osa04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00260 Glycine, serine and threonine metabolism 3
cre01230 Biosynthesis of amino acids 3
cre01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837797 103843128 103872006 111206485 106402160 106445582 107946968 107936380 107941637 102612769 100800113 100793679 100256891 18094418 11407134 101261350 102604367 107782632 107774235 4340044 100125655 123167378 123150475 123087871 123408852 110431214 100834344 5717588
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