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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   HCF173   high chlorophyll fluorescence phenotype 173 
 ath-r.7   HCF173   high chlorophyll fluorescence phenotype 173 
 ath-m.9   HCF173   high chlorophyll fluorescence phenotype 173 
 ath-e.2   HCF173   high chlorophyll fluorescence phenotype 173 
 ath-m.4.bio   HCF173   high chlorophyll fluorescence phenotype 173 
 ath-m.4.hor   HCF173   high chlorophyll fluorescence phenotype 173 
 ath-m.4.lig   HCF173   high chlorophyll fluorescence phenotype 173 
 ath-m.4.str   HCF173   high chlorophyll fluorescence phenotype 173 
 ath-m.4.tis   HCF173   high chlorophyll fluorescence phenotype 173 
 gma-u.5   100811347   protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic 
 gma-u.5   100779812   protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic 
 vvi-u.5   100256501   protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic 
 ppo-u.5   18104727   protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic 
 ppo-u.5   7497749   protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic 
 mtr-u.5   11428397   protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic 
 sly-u.5   101263137   protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic 
 osa-u.5   4328240   uncharacterized LOC4328240 
 osa-u.5   4341998   protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic 
 zma-u.5   100501691   uncharacterized LOC100501691 

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Top 50 coexpressed genes to HCF173 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HCF173 (ath-u.5 coexpression data)

CoexMap"838243"


athHCF173 | Entrez gene ID : 838243      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 9 2 1 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006413 [list] [network] translational initiation  (23 genes)  IMP  
GO:0010207 [list] [network] photosystem II assembly  (27 genes)  IMP  
GO CC
GO:0031969 [list] [network] chloroplast membrane  (123 genes)  IDA  
GO:0042651 [list] [network] thylakoid membrane  (348 genes)  IDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
GO:0003723 [list] [network] RNA binding  (1764 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001323375.1 [sequence] [blastp]
NP_001323376.1 [sequence] [blastp]
NP_173116.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for NP_001323375.1)
chlo 9,  chlo_mito 5  (predict for NP_001323376.1)
chlo 9,  chlo_mito 5  (predict for NP_173116.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001323375.1)
chlo 7  (predict for NP_001323376.1)
chlo 7  (predict for NP_173116.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
HCF173

.
ath-r.7
for
HCF173

.
ath-m.9
for
HCF173

.
ath-e.2
for
HCF173

.
ath-m.4.bio
for
HCF173

.
ath-m.4.hor
for
HCF173

.
ath-m.4.lig
for
HCF173

.
ath-m.4.str
for
HCF173

.
ath-m.4.tis
for
HCF173

.
gma-u.5
for
100811347

.
gma-u.5
for
100779812

.
vvi-u.5
for
100256501

.
ppo-u.5
for
18104727

.
ppo-u.5
for
7497749

.
mtr-u.5
for
11428397

.
sly-u.5
for
101263137

.
osa-u.5
for
4328240

.
osa-u.5
for
4341998

.
zma-u.5
for
100501691

.


Ortholog ID: 8699
Species ath gma gma sly osa osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol HCF173 LOC100779812 LOC100811347 LOC101263137 LOC4328240 LOC4341998 LOC100501691 LOC103872461 LOC100256501 LOC7497749 LOC18104727 LOC11428397 LOC123148589 LOC123156704 LOC123412252 LOC121229323 LOC107906390 BNAC05G12780D LOC106346749 CHLRE_13g578650v5 LOC8064953 LOC8057542 LOC102591205 LOC102624935 LOC100843331 LOC107798300 LOC107798218
Function* high chlorophyll fluorescence phenotype 173 protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic uncharacterized LOC4328240 protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic uncharacterized LOC100501691 protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic uncharacterized protein uncharacterized LOC8064953 uncharacterized LOC8057542 uncharacterized LOC102591205 protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic uncharacterized LOC100843331 protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic-like protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
tae00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00561 Glycerolipid metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 2
sbi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00040 Pentose and glucuronate interconversions 2
nta00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00040 Pentose and glucuronate interconversions 2
nta00051 Fructose and mannose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838243 100779812 100811347 101263137 4328240 4341998 100501691 103872461 100256501 7497749 18104727 11428397 123148589 123156704 123412252 121229323 107906390 106365586 106346749 5719281 8064953 8057542 102591205 102624935 100843331 107798300 107798218
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