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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PRD3   putative recombination initiation defects 3 
 ath-r.7   PRD3   putative recombination initiation defects 3 
 ath-e.2   PRD3   putative recombination initiation defects 3 
 bra-r.6   103844671   putative recombination initiation defects 3 
 bna-r.1   106370855   putative recombination initiation defects 3 
 mtr-u.5   11444577   putative recombination initiation defects 3 
 nta-r.1   107811522   putative recombination initiation defects 3 
 nta-r.1   107827597   putative recombination initiation defects 3 
 osa-u.5   4331321   protein PAIR1-like 
 zma-u.5   103630570   protein PAIR1 
 zma-u.5   100192912   uncharacterized LOC100192912 
 tae-r.2   123053430   protein PAIR1 
 hvu-r.1   123449951   protein PAIR1-like 

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Top 50 coexpressed genes to PRD3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PRD3 (ath-u.5 coexpression data)

CoexMap"839243"


athPRD3 | Entrez gene ID : 839243      
Species ath bra bna mtr nta osa zma tae hvu cre gma sbi bdi vvi cit ghi ppo sly sot
Paralog 3 1 1 1 2 1 2 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042138 [list] [network] meiotic DNA double-strand break formation  (7 genes)  IMP  
GO:0051026 [list] [network] chiasma assembly  (16 genes)  IMP  
GO:0048236 [list] [network] plant-type sporogenesis  (40 genes)  IEA  
GO:0070192 [list] [network] chromosome organization involved in meiotic cell cycle  (41 genes)  IEA  
GO:0009553 [list] [network] embryo sac development  (161 genes)  IMP  
GO:0009555 [list] [network] pollen development  (385 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001318904.1 [sequence] [blastp]
NP_001322648.1 [sequence] [blastp]
NP_001322649.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 4,  mito 1  (predict for NP_001318904.1)
chlo 7,  nucl 1,  cyto_nucl 1  (predict for NP_001322648.1)
chlo 5,  chlo_mito 4,  mito 2,  nucl 2  (predict for NP_001322649.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001318904.1)
chlo 6  (predict for NP_001322648.1)
chlo 7  (predict for NP_001322649.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PRD3
ath-r.7
for
PRD3
ath-e.2
for
PRD3
bra-r.6
for
103844671
bna-r.1
for
106370855
mtr-u.5
for
11444577
nta-r.1
for
107811522
nta-r.1
for
107827597
osa-u.5
for
4331321
zma-u.5
for
103630570
zma-u.5
for
100192912
tae-r.2
for
123053430
hvu-r.1
for
123449951


Ortholog ID: 4824
Species ath bra bna bna mtr nta nta osa zma zma tae hvu
Symbol PRD3 LOC103844671 LOC106370855 LOC106358377 LOC11444577 LOC107811522 LOC107827597 LOC4331321 LOC103630570 LOC100192912 LOC123189336 LOC123449951
Function* putative recombination initiation defects 3 putative recombination initiation defects 3 putative recombination initiation defects 3 putative recombination initiation defects 3 putative recombination initiation defects 3 putative recombination initiation defects 3 putative recombination initiation defects 3 protein PAIR1-like protein PAIR1 uncharacterized LOC100192912 protein PAIR1 protein PAIR1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 2
bna04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 2
bna04130 SNARE interactions in vesicular transport 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 4
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 10
zma00020 Citrate cycle (TCA cycle) 9
zma01210 2-Oxocarboxylic acid metabolism 6
zma00640 Propanoate metabolism 6
zma00010 Glycolysis / Gluconeogenesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04814 Motor proteins 5
tae03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839243 103844671 106370855 106358377 11444577 107811522 107827597 4331321 103630570 100192912 123189336 123449951
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