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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   LHY   Homeodomain-like superfamily protein 
 ath-r.7   LHY   Homeodomain-like superfamily protein 
 ath-m.9   LHY   Homeodomain-like superfamily protein 
 ath-e.2   LHY   Homeodomain-like superfamily protein 
 ath-m.4.bio   LHY   Homeodomain-like superfamily protein 
 ath-m.4.hor   LHY   Homeodomain-like superfamily protein 
 ath-m.4.lig   LHY   Homeodomain-like superfamily protein 
 ath-m.4.str   LHY   Homeodomain-like superfamily protein 
 ath-m.4.tis   LHY   Homeodomain-like superfamily protein 
 gma-u.5   MYB114   MYB transcription factor MYB114 
 gma-u.5   LCL4   LHY1/CCA1-like protein 
 gma-u.5   LCL1   late elongated hypocotyl and circadian clock associated-1-like protein 1 
 vvi-u.5   100250535   protein LATE ELONGATED HYPOCOTYL 
 ppo-u.5   7478808   protein LATE ELONGATED HYPOCOTYL 
 ppo-u.5   7486811   protein LATE ELONGATED HYPOCOTYL 
 mtr-u.5   11432385   protein LATE ELONGATED HYPOCOTYL 
 sly-u.5   101261662   protein LATE ELONGATED HYPOCOTYL 
 osa-u.5   4344703   protein LHY 
 zma-u.5   100281091   LHY protein 
 zma-u.5   100192868   uncharacterized LOC100192868 

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Top 50 coexpressed genes to LHY (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LHY (ath-u.5 coexpression data)

CoexMap"839341"


athLHY | Entrez gene ID : 839341      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 9 3 1 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04712 [list] [network] Circadian rhythm - plant (43 genes)
GO BP
GO:0042754 [list] [network] negative regulation of circadian rhythm  (3 genes)  IMP  
GO:0043433 [list] [network] negative regulation of DNA-binding transcription factor activity  (5 genes)  IMP  
GO:0048574 [list] [network] long-day photoperiodism, flowering  (20 genes)  IGI  
GO:0042752 [list] [network] regulation of circadian rhythm  (59 genes)  IMP  
GO:0007623 [list] [network] circadian rhythm  (124 genes)  IGI  
GO:0009409 [list] [network] response to cold  (436 genes)  IGI  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  ISS TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IDA IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  IDA ISS  
Protein NP_001030924.1 [sequence] [blastp]
NP_001077437.1 [sequence] [blastp]
NP_001184882.1 [sequence] [blastp]
NP_001320627.1 [sequence] [blastp]
NP_001320628.1 [sequence] [blastp]
NP_001320629.1 [sequence] [blastp]
NP_171614.1 [sequence] [blastp]
NP_849568.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001030924.1)
nucl 10  (predict for NP_001077437.1)
nucl 10  (predict for NP_001184882.1)
nucl 10  (predict for NP_001320627.1)
nucl 10  (predict for NP_001320628.1)
nucl 10  (predict for NP_001320629.1)
nucl 10  (predict for NP_171614.1)
nucl 10  (predict for NP_849568.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001030924.1)
other 8  (predict for NP_001077437.1)
other 6,  mito 3  (predict for NP_001184882.1)
other 8  (predict for NP_001320627.1)
other 6,  mito 3  (predict for NP_001320628.1)
other 8  (predict for NP_001320629.1)
other 8  (predict for NP_171614.1)
other 8  (predict for NP_849568.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
LHY
ath-r.7
for
LHY
ath-m.9
for
LHY
ath-e.2
for
LHY
ath-m.4.bio
for
LHY
ath-m.4.hor
for
LHY
ath-m.4.lig
for
LHY
ath-m.4.str
for
LHY
ath-m.4.tis
for
LHY
gma-u.5
for
MYB114
gma-u.5
for
LCL4
gma-u.5
for
LCL1
vvi-u.5
for
100250535
ppo-u.5
for
7478808
ppo-u.5
for
7486811
mtr-u.5
for
11432385
sly-u.5
for
101261662
osa-u.5
for
4344703
zma-u.5
for
100281091
zma-u.5
for
100192868


Ortholog ID: 5626
Species ath bra bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma zma tae tae hvu sbi bdi
Symbol LHY LOC103844616 LOC103836661 LOC106370900 LOC125595220 LOC121210912 LOC107912274 LOC102627326 LCL1 MYB114 LOC100250535 LOC7478808 LOC7486811 LOC11432385 LOC101261662 LOC102601616 LOC107786145 LOC107775222 LOC4344703 LOC100281091 LOC100192868 LOC123147271 LOC123167076 LOC123407924 LOC8080836 LOC100838310
Function* Homeodomain-like superfamily protein protein LHY protein LHY protein LHY protein LHY-like protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL late elongated hypocotyl and circadian clock associated-1-like protein 1 MYB transcription factor MYB114 protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL protein LHY protein LATE ELONGATED HYPOCOTYL protein LATE ELONGATED HYPOCOTYL-like protein LHY LHY protein uncharacterized LOC100192868 protein LHY protein LHY protein LHY protein CCA1 protein CCA1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 3
ath00270 Cysteine and methionine metabolism 2
ath00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 3
bna00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
gma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 3
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00562 Inositol phosphate metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839341 103844616 103836661 106370900 125595220 121210912 107912274 102627326 100271888 778086 100250535 7478808 7486811 11432385 101261662 102601616 107786145 107775222 4344703 100281091 100192868 123147271 123167076 123407924 8080836 100838310
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