ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT1G27750	nucleic acid binding protein
ath-r.7	AT1G27750	nucleic acid binding protein
ath-e.2	AT1G27750	nucleic acid binding protein
ath-u.5	AT1G27752	Ubiquitin system component Cue protein
bra-r.6	103835373	activating signal cointegrator 1 complex subunit 2
bra-r.6	103839018	uncharacterized LOC103839018
bna-r.1	106431668	uncharacterized LOC106431668
bna-r.1	106389575	activating signal cointegrator 1 complex subunit 2
bna-r.1	111215638	activating signal cointegrator 1 complex subunit 2-like
ghi-r.1	107957917	uncharacterized LOC107957917
ghi-r.1	107933436	activating signal cointegrator 1 complex subunit 2
ghi-r.1	107918082	activating signal cointegrator 1 complex subunit 2
cit-r.1	102623233	uncharacterized LOC102623233
gma-u.5	100798033	uncharacterized LOC100798033
gma-u.5	100780367	uncharacterized LOC100780367
gma-u.5	100778129	activating signal cointegrator 1 complex subunit 2
vvi-u.5	100259158	uncharacterized LOC100259158
ppo-u.5	112324083	uncharacterized LOC112324083
ppo-u.5	7488872	uncharacterized LOC7488872
mtr-u.5	25489957	activating signal cointegrator 1 complex subunit 2
mtr-u.5	11414216	uncharacterized LOC11414216
sly-u.5	101254688	uncharacterized LOC101254688
sly-u.5	101254993	uncharacterized LOC101254993
sot-r.1	102600101	uncharacterized LOC102600101
sot-r.1	102599767	activating signal cointegrator 1 complex subunit 2
nta-r.1	107818486	uncharacterized LOC107818486
nta-r.1	107764711	uncharacterized LOC107764711
nta-r.1	107818485	uncharacterized LOC107818485
osa-u.5	4326897	uncharacterized LOC4326897
osa-u.5	4331989	uncharacterized LOC4331989
zma-u.5	103651171	nucleic acid binding
zma-u.5	103632203	uncharacterized LOC103632203
tae-r.2	123079276	uncharacterized LOC123079276
tae-r.2	123070886	uncharacterized LOC123070886
tae-r.2	123062162	uncharacterized LOC123062162
hvu-r.1	123444495	uncharacterized LOC123444495
hvu-r.1	123449389	activating signal cointegrator 1 complex subunit 2
sbi-r.1	8079249	uncharacterized LOC8079249
sbi-r.1	8081865	uncharacterized LOC8081865
bdi-r.1	100824940	activating signal cointegrator 1 complex subunit 2
bdi-r.1	100834200	uncharacterized LOC100834200
cre-r.1	CHLRE_13g568750v5	uncharacterized protein
cre-r.1	CHLRE_09g398030v5	uncharacterized protein

Top 50 coexpressed genes to AT1G27750 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT1G27750 (ath-u.5 coexpression data)

CoexMap"839668"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

GO:0003676 [list] [network] nucleic acid binding

(3104 genes)

IEA

Protein

NP_174096.3 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for NP_174096.3)

Subcellular
localization
TargetP

other 4, chlo 3

(predict for NP_174096.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT1G27750	ath-r.7 for AT1G27750	ath-e.2 for AT1G27750	ath-u.5 for AT1G27752	bra-r.6 for 103835373	bra-r.6 for 103839018	bna-r.1 for 106431668	bna-r.1 for 106389575	bna-r.1 for 111215638	ghi-r.1 for 107957917	ghi-r.1 for 107933436	ghi-r.1 for 107918082	cit-r.1 for 102623233	gma-u.5 for 100798033	gma-u.5 for 100780367	gma-u.5 for 100778129	vvi-u.5 for 100259158	ppo-u.5 for 112324083	ppo-u.5 for 7488872	mtr-u.5 for 25489957	mtr-u.5 for 11414216	sly-u.5 for 101254688	sly-u.5 for 101254993	sot-r.1 for 102600101	sot-r.1 for 102599767	nta-r.1 for 107818486	nta-r.1 for 107764711	nta-r.1 for 107818485	osa-u.5 for 4326897	osa-u.5 for 4331989	zma-u.5 for 103651171	zma-u.5 for 103632203	tae-r.2 for 123079276	tae-r.2 for 123070886	tae-r.2 for 123062162	hvu-r.1 for 123444495	hvu-r.1 for 123449389	sbi-r.1 for 8079249	sbi-r.1 for 8081865	bdi-r.1 for 100824940	bdi-r.1 for 100834200	cre-r.1 for CHLRE_13g568750v5	cre-r.1 for CHLRE_09g398030v5

Ortholog

Ortholog ID: 3867

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

nucleic acid binding protein

Ubiquitin system component Cue protein

activating signal cointegrator 1 complex subunit 2

uncharacterized LOC103839018

activating signal cointegrator 1 complex subunit 2

activating signal cointegrator 1 complex subunit 2-like

uncharacterized LOC106367308

uncharacterized LOC107957917

activating signal cointegrator 1 complex subunit 2

uncharacterized LOC107958183

uncharacterized LOC102623233

uncharacterized LOC100798033

uncharacterized LOC100780367

activating signal cointegrator 1 complex subunit 2

uncharacterized LOC100259158

uncharacterized LOC112324083

uncharacterized LOC7488872

activating signal cointegrator 1 complex subunit 2

uncharacterized LOC11414216

uncharacterized LOC101254688

uncharacterized LOC101254993

uncharacterized LOC102600101

activating signal cointegrator 1 complex subunit 2

uncharacterized LOC107818486

uncharacterized LOC107764711

uncharacterized LOC107818485

uncharacterized LOC4326897

uncharacterized LOC4331989

nucleic acid binding

uncharacterized LOC103632203

uncharacterized LOC123079276

uncharacterized LOC123062162

activating signal cointegrator 1 complex subunit 2

uncharacterized LOC123444495

activating signal cointegrator 1 complex subunit 2

uncharacterized LOC8079249

uncharacterized LOC8081865

activating signal cointegrator 1 complex subunit 2

uncharacterized LOC100834200

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2
ath03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	2
bna04075	Plant hormone signal transduction	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	2
gma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	3
gma03420	Nucleotide excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04148	Efferocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	3
sly03250	Viral life cycle - HIV-1	2
sly03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot04120	Ubiquitin mediated proteolysis	3
sot04141	Protein processing in endoplasmic reticulum	3
sot03013	Nucleocytoplasmic transport	2
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	5
nta04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	5
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	4
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03030	DNA replication	2
bdi03420	Nucleotide excision repair	2
bdi03430	Mismatch repair	2
bdi03440	Homologous recombination	2
bdi03460	Fanconi anemia pathway	2

Expression

Expression pattern

Entrez Gene ID^*

839668

5007732

103835373

103839018

106389575

111215638

106367308

107957917

107918082

107958183

102623233

100798033

100780367

100778129

100259158

112324083

7488872

25489957

11414216

101254688

101254993

102600101

102599767

107818486

107764711

107818485

4326897

4331989

103651171

103632203

123079276

123062162

123093065

123444495

123449389

8079249

8081865

100824940

100834200

66055931

5720369

The preparation time of this page was 0.4 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	3	1	3	1	2	2	2	2	3	2	2	3	2	2	2	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G27750 (ath-u.5 coexpression data)

Top 50 enrichment test to AT1G27750 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**