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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   HB-1   homeobox-1 
 ath-r.7   HB-1   homeobox-1 
 ath-m.9   HB-1   homeobox-1 
 ath-e.2   HB-1   homeobox-1 
 ath-m.4.bio   HB-1   homeobox-1 
 ath-m.4.hor   HB-1   homeobox-1 
 ath-m.4.lig   HB-1   homeobox-1 
 ath-m.4.str   HB-1   homeobox-1 
 ath-m.4.tis   HB-1   homeobox-1 
 ath-u.5   RLT2   Homeodomain-like transcriptional regulator 
 gma-u.5   100818817   homeobox-DDT domain protein RLT1 
 gma-u.5   100797480   homeobox-DDT domain protein RLT2 
 gma-u.5   100784945   homeobox-DDT domain protein RLT1 
 vvi-u.5   100250601   homeobox-DDT domain protein RLT2 
 vvi-u.5   100247033   homeobox-DDT domain protein RLT1 
 ppo-u.5   7476373   homeobox-DDT domain protein RLT1 
 ppo-u.5   7491716   homeobox-DDT domain protein RLT2 
 ppo-u.5   18106807   homeobox-DDT domain protein RLT2 
 mtr-u.5   11441271   homeobox-DDT domain protein RLT1 
 mtr-u.5   11439750   homeobox-DDT domain protein RLT2 
 mtr-u.5   25493092   homeobox-DDT domain protein RLT1 
 sly-u.5   101262772   homeobox-DDT domain protein RLT1 
 sly-u.5   101253299   homeobox-DDT domain protein RLT2 
 osa-u.5   4325898   homeobox-DDT domain protein RLT2 
 osa-u.5   4339610   homeobox-DDT domain protein RLT2 
 zma-u.5   103641705   homeobox-DDT domain protein RLT2 
 zma-u.5   103651374   homeobox-DDT domain protein RLT2 
 zma-u.5   103636162   homeobox-DDT domain protein RLT2 

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Top 50 coexpressed genes to HB-1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HB-1 (ath-u.5 coexpression data)

CoexMap"839740"


athHB-1 | Entrez gene ID : 839740      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 10 3 2 3 3 2 2 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0048510 [list] [network] regulation of timing of transition from vegetative to reproductive phase  (43 genes)  IMP  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (55 genes)  IEA  
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (186 genes)  IGI  
GO:0045892 [list] [network] negative regulation of DNA-templated transcription  (200 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA  
GO CC
GO:0031010 [list] [network] ISWI-type complex  (14 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003677 [list] [network] DNA binding  (1274 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_174164.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1  (predict for NP_174164.2)
Subcellular
localization
TargetP
other 9  (predict for NP_174164.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
HB-1
ath-r.7
for
HB-1
ath-m.9
for
HB-1
ath-e.2
for
HB-1
ath-m.4.bio
for
HB-1
ath-m.4.hor
for
HB-1
ath-m.4.lig
for
HB-1
ath-m.4.str
for
HB-1
ath-m.4.tis
for
HB-1
ath-u.5
for
RLT2
gma-u.5
for
100818817
gma-u.5
for
100797480
gma-u.5
for
100784945
vvi-u.5
for
100250601
vvi-u.5
for
100247033
ppo-u.5
for
7476373
ppo-u.5
for
7491716
ppo-u.5
for
18106807
mtr-u.5
for
11441271
mtr-u.5
for
11439750
mtr-u.5
for
25493092
sly-u.5
for
101262772
sly-u.5
for
101253299
osa-u.5
for
4325898
osa-u.5
for
4339610
zma-u.5
for
103641705
zma-u.5
for
103651374
zma-u.5
for
103636162


Ortholog ID: 2241
Species ath ath bra bra bna bna ghi ghi cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol HB-1 RLT2 LOC103835318 LOC103827923 LOC106435103 LOC106422060 LOC121230889 LOC121230890 LOC102609052 LOC100797480 LOC100784945 LOC100250601 LOC100247033 LOC18103066 LOC7491716 LOC25493092 LOC11441271 LOC101253299 LOC101262772 LOC102579072 LOC102587822 LOC107777592 LOC107783246 LOC4325898 LOC4339610 LOC103651374 LOC103641705 LOC123145755 LOC123070323 LOC123450209 LOC123444072 LOC8155530 LOC8061841 LOC100827669 LOC100835009 CHLRE_03g174500v5
Function* homeobox-1 Homeodomain-like transcriptional regulator homeobox-DDT domain protein RLT1 homeobox-DDT domain protein RLT2 homeobox-DDT domain protein RLT1 homeobox-DDT domain protein RLT1 homeobox-DDT domain protein RLT1 homeobox-DDT domain protein RLT1 homeobox-DDT domain protein RLT1 homeobox-DDT domain protein RLT2 homeobox-DDT domain protein RLT1 homeobox-DDT domain protein RLT2 homeobox-DDT domain protein RLT1 homeobox-DDT domain protein RLT1 homeobox-DDT domain protein RLT2 homeobox-DDT domain protein RLT1 homeobox-DDT domain protein RLT1 homeobox-DDT domain protein RLT2 homeobox-DDT domain protein RLT1 uncharacterized LOC102579072 uncharacterized LOC102587822 homeobox-DDT domain protein RLT2 homeobox-DDT domain protein RLT1 homeobox-DDT domain protein RLT2 homeobox-DDT domain protein RLT2 homeobox-DDT domain protein RLT2 homeobox-DDT domain protein RLT2 homeobox-DDT domain protein RLT2 homeobox-DDT domain protein RLT2 homeobox-DDT domain protein RLT2-like homeobox-DDT domain protein RLT2-like homeobox-DDT domain protein RLT2 homeobox-DDT domain protein RLT2 homeobox-DDT domain protein RLT2 homeobox-DDT domain protein RLT2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
ath03013 Nucleocytoplasmic transport 2
ath03083 Polycomb repressive complex 2
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna00310 Lysine degradation 2
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna00310 Lysine degradation 2
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 3
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 3
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
ppo03022 Basal transcription factors 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04146 Peroxisome 2
nta03082 ATP-dependent chromatin remodeling 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
nta04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00562 Inositol phosphate metabolism 2
zma04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00562 Inositol phosphate metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03040 Spliceosome 3
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839740 834441 103835318 103827923 106435103 106422060 121230889 121230890 102609052 100797480 100784945 100250601 100247033 18103066 7491716 25493092 11441271 101253299 101262772 102579072 102587822 107777592 107783246 4325898 4339610 103651374 103641705 123145755 123070323 123450209 123444072 8155530 8061841 100827669 100835009 5728878
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