ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT1G52270	uncharacterized protein
ath-r.7	AT1G52270	uncharacterized protein
ath-e.2	AT1G52270	uncharacterized protein
ath-u.5	AT4G28310	microtubule-associated protein
bra-r.6	103834767	uncharacterized LOC103834767
bra-r.6	103868021	uncharacterized LOC103868021
bna-r.1	BNAC01G20840D	uncharacterized BNAC01G20840D
bna-r.1	BNAA08G13780D	uncharacterized BNAA08G13780D
ghi-r.1	107886778	uncharacterized LOC107886778
ghi-r.1	107898963	uncharacterized LOC107898963
ghi-r.1	107909289	uncharacterized LOC107909289
cit-r.1	102624865	uncharacterized LOC102624865
gma-u.5	102667457	uncharacterized LOC102667457
gma-u.5	102660070	uncharacterized LOC102660070
gma-u.5	100819841	uncharacterized LOC100819841
vvi-u.5	100243770	uncharacterized LOC100243770
ppo-u.5	18104627	uncharacterized LOC18104627
mtr-u.5	25487661	uncharacterized LOC25487661
sly-u.5	104648387	uncharacterized LOC104648387
sly-u.5	104649465	uncharacterized LOC104649465
sot-r.1	102589549	uncharacterized LOC102589549
sot-r.1	107062613	uncharacterized LOC107062613
nta-r.1	107797558	uncharacterized LOC107797558
nta-r.1	107792181	uncharacterized LOC107792181
osa-u.5	9270179	histone H3.v1
zma-u.5	100278717	uncharacterized LOC100278717
zma-u.5	100277642	uncharacterized LOC100277642
tae-r.2	123088273	60S ribosomal protein L22-like
tae-r.2	123114893	uncharacterized LOC123114893
tae-r.2	123088271	60S ribosomal protein L22
hvu-r.1	123411535	60S ribosomal protein L22-like
hvu-r.1	123410198	60S ribosomal protein L22-like
sbi-r.1	8069024	60S ribosomal protein L22
bdi-r.1	100838750	uncharacterized LOC100838750

Top 50 coexpressed genes to AT1G52270 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT1G52270 (ath-u.5 coexpression data)

CoexMap"841657"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_175637.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, mito 4

(predict for NP_175637.1)

Subcellular
localization
TargetP

mito 5

(predict for NP_175637.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT1G52270	ath-r.7 for AT1G52270	ath-e.2 for AT1G52270	ath-u.5 for AT4G28310	bra-r.6 for 103834767	bra-r.6 for 103868021	bna-r.1 for BNAC01G20840D	bna-r.1 for BNAA08G13780D	ghi-r.1 for 107886778	ghi-r.1 for 107898963	ghi-r.1 for 107909289	cit-r.1 for 102624865	gma-u.5 for 102667457	gma-u.5 for 102660070	gma-u.5 for 100819841	vvi-u.5 for 100243770	ppo-u.5 for 18104627	mtr-u.5 for 25487661	sly-u.5 for 104648387	sly-u.5 for 104649465	sot-r.1 for 102589549	sot-r.1 for 107062613	nta-r.1 for 107797558	nta-r.1 for 107792181	osa-u.5 for 9270179	zma-u.5 for 100278717	zma-u.5 for 100277642	tae-r.2 for 123088273	tae-r.2 for 123114893	tae-r.2 for 123088271	hvu-r.1 for 123411535	hvu-r.1 for 123410198	sbi-r.1 for 8069024	bdi-r.1 for 100838750

Ortholog

Ortholog ID: 4276

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized protein

microtubule-associated protein

uncharacterized LOC103834767

uncharacterized LOC103868021

uncharacterized BNAA08G13780D

uncharacterized LOC106412145

uncharacterized LOC107898963

uncharacterized LOC107909289

uncharacterized LOC107948978

uncharacterized LOC102624865

uncharacterized LOC102667457

uncharacterized LOC100819841

uncharacterized LOC100781758

uncharacterized LOC100243770

uncharacterized LOC18104627

uncharacterized LOC25487661

uncharacterized LOC104648387

uncharacterized LOC104649465

uncharacterized LOC102589549

uncharacterized LOC107062613

uncharacterized LOC107797558

uncharacterized LOC107792181

histone H3.v1

uncharacterized LOC100278717

uncharacterized LOC100277642

uncharacterized LOC123114893

histone H1-beta, late embryonic-like

60S ribosomal protein L22

60S ribosomal protein L22-like

60S ribosomal protein L22

uncharacterized LOC100838750

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	2
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03030	DNA replication	5
ath03420	Nucleotide excision repair	4
ath03430	Mismatch repair	4
ath03440	Homologous recombination	4
ath03460	Fanconi anemia pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03030	DNA replication	8
bra03440	Homologous recombination	5
bra03420	Nucleotide excision repair	4
bra03430	Mismatch repair	4
bra03460	Fanconi anemia pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03030	DNA replication	5
bna03420	Nucleotide excision repair	3
bna03430	Mismatch repair	3
bna00240	Pyrimidine metabolism	2
bna01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03030	DNA replication	5
bna03420	Nucleotide excision repair	3
bna03430	Mismatch repair	3
bna00240	Pyrimidine metabolism	2
bna01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03030	DNA replication	2
ghi03410	Base excision repair	2
ghi03420	Nucleotide excision repair	2
ghi03430	Mismatch repair	2
ghi00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03030	DNA replication	2
ghi03410	Base excision repair	2
ghi03420	Nucleotide excision repair	2
ghi03430	Mismatch repair	2
ghi00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00240	Pyrimidine metabolism	4
cit01232	Nucleotide metabolism	4
cit03030	DNA replication	3
cit00230	Purine metabolism	2
cit00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00062	Fatty acid elongation	2
gma01040	Biosynthesis of unsaturated fatty acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03030	DNA replication	9
gma03440	Homologous recombination	3
gma03082	ATP-dependent chromatin remodeling	2
gma03410	Base excision repair	2
gma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03030	DNA replication	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03030	DNA replication	5
ppo00230	Purine metabolism	3
ppo00240	Pyrimidine metabolism	3
ppo00480	Glutathione metabolism	3
ppo01232	Nucleotide metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03030	DNA replication	12
mtr03420	Nucleotide excision repair	3
mtr03430	Mismatch repair	2
mtr03440	Homologous recombination	2
mtr03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03030	DNA replication	10
sly00240	Pyrimidine metabolism	2
sly01232	Nucleotide metabolism	2
sly03420	Nucleotide excision repair	2
sly03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00240	Pyrimidine metabolism	4
sly01232	Nucleotide metabolism	4
sly03030	DNA replication	3
sly00230	Purine metabolism	2
sly00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03030	DNA replication	7
sot00240	Pyrimidine metabolism	3
sot01232	Nucleotide metabolism	3
sot00230	Purine metabolism	2
sot00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03030	DNA replication	9
sot00240	Pyrimidine metabolism	4
sot01232	Nucleotide metabolism	4
sot00230	Purine metabolism	2
sot00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	8
nta01232	Nucleotide metabolism	8
nta00230	Purine metabolism	6
nta00480	Glutathione metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00230	Purine metabolism	4
nta00240	Pyrimidine metabolism	4
nta00480	Glutathione metabolism	4
nta01232	Nucleotide metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03030	DNA replication	9
osa00240	Pyrimidine metabolism	3
osa01232	Nucleotide metabolism	3
osa00230	Purine metabolism	2
osa00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03030	DNA replication	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03030	DNA replication	12
zma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00240	Pyrimidine metabolism	3
tae01232	Nucleotide metabolism	3
tae00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00310	Lysine degradation	3
tae03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00240	Pyrimidine metabolism	3
tae01232	Nucleotide metabolism	3
tae00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	6
hvu03030	DNA replication	2
hvu03420	Nucleotide excision repair	2
hvu03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03030	DNA replication	4
hvu00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03030	DNA replication	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03030	DNA replication	7
bdi03440	Homologous recombination	3
bdi03460	Fanconi anemia pathway	2
bdi03430	Mismatch repair	2

Expression

Expression pattern

Entrez Gene ID^*

841657

828946

103834767

103868021

106359832

106412145

107898963

107909289

107948978

102624865

102667457

100819841

100781758

100243770

18104627

25487661

104648387

104649465

102589549

107062613

107797558

107792181

9270179

100278717

100277642

123114893

123168608

123083293

123411535

123410198

8069024

100838750

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	2	3	1	3	1	1	1	2	2	2	1	2	3	2	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G52270 (ath-u.5 coexpression data)

Top 50 enrichment test to AT1G52270 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**