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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   TLP18.3   thylakoid lumen 18.3 kDa protein 
 ath-r.7   TLP18.3   thylakoid lumen 18.3 kDa protein 
 ath-m.9   TLP18.3   thylakoid lumen 18.3 kDa protein 
 ath-e.2   TLP18.3   thylakoid lumen 18.3 kDa protein 
 ath-m.4.bio   TLP18.3   thylakoid lumen 18.3 kDa protein 
 ath-m.4.hor   TLP18.3   thylakoid lumen 18.3 kDa protein 
 ath-m.4.lig   TLP18.3   thylakoid lumen 18.3 kDa protein 
 ath-m.4.str   TLP18.3   thylakoid lumen 18.3 kDa protein 
 ath-m.4.tis   TLP18.3   thylakoid lumen 18.3 kDa protein 
 bra-r.6   103844487   UPF0603 protein At1g54780, chloroplastic 
 bna-r.1   106376613   UPF0603 protein At1g54780, chloroplastic 
 bna-r.1   106396419   UPF0603 protein At1g54780, chloroplastic 
 ghi-r.1   107887770   UPF0603 protein At1g54780, chloroplastic 
 ghi-r.1   107941400   UPF0603 protein At1g54780, chloroplastic 
 cit-r.1   102628983   UPF0603 protein At1g54780, chloroplastic 
 gma-u.5   100813027   UPF0603 protein At1g54780, chloroplastic-like 
 gma-u.5   100778682   UPF0603 protein At1g54780, chloroplastic 
 vvi-u.5   100254639   UPF0603 protein At1g54780, chloroplastic 
 ppo-u.5   18098830   UPF0603 protein At1g54780, chloroplastic 
 ppo-u.5   7473306   UPF0603 protein At1g54780, chloroplastic 
 mtr-u.5   11405923   UPF0603 protein At1g54780, chloroplastic 
 sly-u.5   101258104   UPF0603 protein At1g54780, chloroplastic 
 sot-r.1   102588194   UPF0603 protein At1g54780, chloroplastic 
 nta-r.1   107826018   UPF0603 protein At1g54780, chloroplastic 
 nta-r.1   142161854   UPF0603 protein At1g54780, chloroplastic-like 
 osa-u.5   4338729   UPF0603 protein Os05g0401100, chloroplastic-like 
 zma-u.5   100285398   uncharacterized LOC100285398 
 tae-r.2   123132131   UPF0603 protein OsI_019212, chloroplastic 
 tae-r.2   123055054   UPF0603 protein OsI_019212, chloroplastic 
 tae-r.2   123181948   UPF0603 protein OsI_019212, chloroplastic 
 hvu-r.1   123441764   UPF0603 protein OsI_019212, chloroplastic 
 sbi-r.1   8076876   UPF0603 protein Os05g0401100, chloroplastic 
 bdi-r.1   100844172   UPF0603 protein Os05g0401100, chloroplastic 
 cre-r.1   CHLRE_03g182150v5   uncharacterized protein 

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Top 50 coexpressed genes to TLP18.3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TLP18.3 (ath-u.5 coexpression data)

CoexMap"841919"


athTLP18.3 | Entrez gene ID : 841919      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 2 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010206 [list] [network] photosystem II repair  (13 genes)  IMP  
GO:0016311 [list] [network] dephosphorylation  (97 genes)  IDA  
GO CC
GO:0009543 [list] [network] chloroplast thylakoid lumen  (52 genes)  HDA  
GO:0031977 [list] [network] thylakoid lumen  (69 genes)  HDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA  
GO MF
GO:0003993 [list] [network] acid phosphatase activity  (39 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_564667.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 1,  plas 1,  vacu 1,  golg 1,  cyto_mito 1,  golg_plas 1  (predict for NP_564667.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_564667.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
TLP18.3
ath-r.7
for
TLP18.3
ath-m.9
for
TLP18.3
ath-e.2
for
TLP18.3
ath-m.4.bio
for
TLP18.3
ath-m.4.hor
for
TLP18.3
ath-m.4.lig
for
TLP18.3
ath-m.4.str
for
TLP18.3
ath-m.4.tis
for
TLP18.3
bra-r.6
for
103844487
bna-r.1
for
106376613
bna-r.1
for
106396419
ghi-r.1
for
107887770
ghi-r.1
for
107941400
cit-r.1
for
102628983
gma-u.5
for
100813027
gma-u.5
for
100778682
vvi-u.5
for
100254639
ppo-u.5
for
18098830
ppo-u.5
for
7473306
mtr-u.5
for
11405923
sly-u.5
for
101258104
sot-r.1
for
102588194
nta-r.1
for
107826018
nta-r.1
for
142161854
osa-u.5
for
4338729
zma-u.5
for
100285398
tae-r.2
for
123132131
tae-r.2
for
123055054
tae-r.2
for
123181948
hvu-r.1
for
123441764
sbi-r.1
for
8076876
bdi-r.1
for
100844172
cre-r.1
for
CHLRE_03g182150v5


Ortholog ID: 9847
Species ath bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol TLP18.3 LOC103844487 LOC106376613 LOC106396419 LOC107887770 LOC107941400 LOC102628983 LOC100813027 LOC100778682 LOC100254639 LOC18098830 LOC7473306 LOC11405923 LOC101258104 LOC102588194 LOC107826018 LOC142161854 LOC4338729 LOC100285398 LOC123132131 LOC123055054 LOC123181948 LOC123441764 LOC8076876 LOC100844172 CHLRE_03g182150v5
Function* thylakoid lumen 18.3 kDa protein UPF0603 protein At1g54780, chloroplastic UPF0603 protein At1g54780, chloroplastic UPF0603 protein At1g54780, chloroplastic UPF0603 protein At1g54780, chloroplastic UPF0603 protein At1g54780, chloroplastic UPF0603 protein At1g54780, chloroplastic UPF0603 protein At1g54780, chloroplastic-like UPF0603 protein At1g54780, chloroplastic UPF0603 protein At1g54780, chloroplastic UPF0603 protein At1g54780, chloroplastic UPF0603 protein At1g54780, chloroplastic UPF0603 protein At1g54780, chloroplastic UPF0603 protein At1g54780, chloroplastic UPF0603 protein At1g54780, chloroplastic UPF0603 protein At1g54780, chloroplastic UPF0603 protein At1g54780, chloroplastic-like UPF0603 protein Os05g0401100, chloroplastic-like uncharacterized LOC100285398 UPF0603 protein OsI_019212, chloroplastic UPF0603 protein OsI_019212, chloroplastic UPF0603 protein OsI_019212, chloroplastic UPF0603 protein OsI_019212, chloroplastic UPF0603 protein Os05g0401100, chloroplastic UPF0603 protein Os05g0401100, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 13
ath00196 Photosynthesis - antenna proteins 2
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 5
bra01200 Carbon metabolism 4
bra01230 Biosynthesis of amino acids 4
bra00710 Carbon fixation by Calvin cycle 3
bra00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01200 Carbon metabolism 10
bna01230 Biosynthesis of amino acids 8
bna00630 Glyoxylate and dicarboxylate metabolism 7
bna00260 Glycine, serine and threonine metabolism 5
bna00460 Cyanoamino acid metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01200 Carbon metabolism 10
bna01230 Biosynthesis of amino acids 8
bna00630 Glyoxylate and dicarboxylate metabolism 7
bna00260 Glycine, serine and threonine metabolism 5
bna00460 Cyanoamino acid metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 5
cit00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 7
vvi01200 Carbon metabolism 4
vvi00710 Carbon fixation by Calvin cycle 3
vvi00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 6
ppo01200 Carbon metabolism 6
ppo00195 Photosynthesis 3
ppo00010 Glycolysis / Gluconeogenesis 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 5
ppo00196 Photosynthesis - antenna proteins 5
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 7
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 10
sly01240 Biosynthesis of cofactors 2
sly00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 15
sot00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 5
nta00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 5
osa00710 Carbon fixation by Calvin cycle 4
osa00630 Glyoxylate and dicarboxylate metabolism 3
osa00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 7
zma00195 Photosynthesis 4
zma00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 9
hvu00710 Carbon fixation by Calvin cycle 7
hvu00630 Glyoxylate and dicarboxylate metabolism 5
hvu00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 4
sbi00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 5
bdi00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00195 Photosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841919 103844487 106376613 106396419 107887770 107941400 102628983 100813027 100778682 100254639 18098830 7473306 11405923 101258104 102588194 107826018 142161854 4338729 100285398 123132131 123055054 123181948 123441764 8076876 100844172 5728455
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