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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   XF1   FAD/NAD(P)-binding oxidoreductase family protein 
 ath-r.7   XF1   FAD/NAD(P)-binding oxidoreductase family protein 
 ath-m.9   XF1   FAD/NAD(P)-binding oxidoreductase family protein 
 ath-e.2   XF1   FAD/NAD(P)-binding oxidoreductase family protein 
 ath-m.4.bio   XF1   FAD/NAD(P)-binding oxidoreductase family protein 
 ath-m.4.hor   XF1   FAD/NAD(P)-binding oxidoreductase family protein 
 ath-m.4.lig   XF1   FAD/NAD(P)-binding oxidoreductase family protein 
 ath-m.4.str   XF1   FAD/NAD(P)-binding oxidoreductase family protein 
 ath-m.4.tis   XF1   FAD/NAD(P)-binding oxidoreductase family protein 
 ath-u.5   SQE2   squalene epoxidase 2 
 ath-u.5   SQE3   squalene epoxidase 3 
 bra-r.6   103864397   squalene epoxidase 3 
 bra-r.6   103857940   squalene epoxidase 3 
 bra-r.6   103838611   squalene epoxidase 1 
 bna-r.1   106432517   squalene epoxidase 3 
 bna-r.1   111211195   squalene epoxidase 1-like 
 bna-r.1   106426862   squalene epoxidase 3 
 ghi-r.1   107905167   squalene monooxygenase SE1 
 ghi-r.1   107908577   squalene monooxygenase SE1 
 ghi-r.1   107916766   squalene monooxygenase SE1 
 gma-u.5   100820031   squalene monooxygenase SE1 
 gma-u.5   100810547   squalene epoxidase 3 
 gma-u.5   100808856   squalene monooxygenase SE1 
 vvi-u.5   100854014   squalene monooxygenase SE2 
 vvi-u.5   100265235   squalene monooxygenase SE1 
 ppo-u.5   7497730   squalene monooxygenase SE1 
 ppo-u.5   18096264   squalene monooxygenase SE1 
 mtr-u.5   25496089   squalene monooxygenase SE1 
 mtr-u.5   11415396   squalene monooxygenase SE1 
 mtr-u.5   25490000   squalene monooxygenase SE1 
 sly-u.5   SQO1   squalene monooxygenase 
 sly-u.5   112940012   squalene epoxidase 3-like 
 sot-r.1   102585235   squalene epoxidase 3-like 
 sot-r.1   102579136   squalene monooxygenase-like 
 nta-r.1   107821041   squalene epoxidase 3 
 nta-r.1   107771747   squalene monooxygenase SE1 
 nta-r.1   107761131   squalene epoxidase 3 
 osa-u.5   4332153   squalene monooxygenase SE1 
 osa-u.5   4332152   squalene monooxygenase SE1 
 zma-u.5   100285558   uncharacterized LOC100285558 
 zma-u.5   100274333   uncharacterized LOC100274333 
 tae-r.2   123085101   squalene monooxygenase SE1 
 tae-r.2   123092891   squalene monooxygenase SE1 
 tae-r.2   123098170   squalene monooxygenase SE1 
 hvu-r.1   123449244   squalene monooxygenase SE1-like 
 sbi-r.1   8056854   squalene monooxygenase 
 bdi-r.1   100839945   squalene monooxygenase 
 cre-r.1   CHLRE_17g734644v5   uncharacterized protein 

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Top 50 coexpressed genes to XF1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to XF1 (ath-u.5 coexpression data)

CoexMap"842213"


athXF1 | Entrez gene ID : 842213      
Species ath bra bna ghi gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre cit
Paralog 11 3 3 3 3 2 2 3 2 2 3 2 2 3 1 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00100 [list] [network] Steroid biosynthesis (36 genes)
ath00909 [list] [network] Sesquiterpenoid and triterpenoid biosynthesis (23 genes)
GO BP
GO:0016126 [list] [network] sterol biosynthetic process  (23 genes)  IMP TAS  
GO:0009723 [list] [network] response to ethylene  (170 genes)  IEP  
GO:0009414 [list] [network] response to water deprivation  (426 genes)  IMP  
GO CC
GO:0005576 [list] [network] extracellular region  (3158 genes)  ISM  
GO MF
GO:0004506 [list] [network] squalene monooxygenase activity  (4 genes)  IGI  
Protein NP_564734.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  plas 2,  E.R. 2,  chlo_mito 2,  E.R._plas 2  (predict for NP_564734.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_564734.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
XF1
ath-r.7
for
XF1
ath-m.9
for
XF1
ath-e.2
for
XF1
ath-m.4.bio
for
XF1
ath-m.4.hor
for
XF1
ath-m.4.lig
for
XF1
ath-m.4.str
for
XF1
ath-m.4.tis
for
XF1
ath-u.5
for
SQE2
ath-u.5
for
SQE3
bra-r.6
for
103864397
bra-r.6
for
103857940
bra-r.6
for
103838611
bna-r.1
for
106432517
bna-r.1
for
111211195
bna-r.1
for
106426862
ghi-r.1
for
107905167
ghi-r.1
for
107908577
ghi-r.1
for
107916766
gma-u.5
for
100820031
gma-u.5
for
100810547
gma-u.5
for
100808856
vvi-u.5
for
100854014
vvi-u.5
for
100265235
ppo-u.5
for
7497730
ppo-u.5
for
18096264
mtr-u.5
for
25496089
mtr-u.5
for
11415396
mtr-u.5
for
25490000
sly-u.5
for
SQO1
sly-u.5
for
112940012
sot-r.1
for
102585235
sot-r.1
for
102579136
nta-r.1
for
107821041
nta-r.1
for
107771747
nta-r.1
for
107761131
osa-u.5
for
4332153
osa-u.5
for
4332152
zma-u.5
for
100285558
zma-u.5
for
100274333
tae-r.2
for
123085101
tae-r.2
for
123092891
tae-r.2
for
123098170
hvu-r.1
for
123449244
sbi-r.1
for
8056854
bdi-r.1
for
100839945
cre-r.1
for
CHLRE_17g734644v5


Ortholog ID: 1909
Species ath ath ath bra bra bra bna bna bna ghi ghi cit gma gma gma vvi vvi ppo mtr mtr mtr sly sly sot sot nta nta nta osa osa zma zma tae tae tae hvu sbi bdi cre
Symbol XF1 SQE2 SQE3 LOC103864397 LOC103857940 LOC103838611 LOC106432517 LOC106392124 LOC106446452 LOC107935261 LOC107938317 LOC102610049 LOC100810547 LOC100804406 LOC100796946 LOC100265235 LOC100254037 LOC7497730 LOC25496089 LOC25482032 LOC25496080 SQO1 LOC112940012 LOC102585235 LOC102579136 LOC107771747 LOC107761131 LOC107828762 LOC4332153 LOC4332152 LOC100285558 LOC100274333 LOC123085101 LOC123092891 LOC123098170 LOC123449244 LOC8056854 LOC100839945 CHLRE_17g734644v5
Function* FAD/NAD(P)-binding oxidoreductase family protein squalene epoxidase 2 squalene epoxidase 3 squalene epoxidase 3 squalene epoxidase 3 squalene epoxidase 1 squalene epoxidase 3 squalene epoxidase 2, mitochondrial squalene epoxidase 3 squalene epoxidase 3 squalene monooxygenase SE1 squalene epoxidase 1-like squalene epoxidase 3 squalene monooxygenase SE1 squalene monooxygenase SE1 squalene monooxygenase SE1 squalene monooxygenase SE1 squalene monooxygenase SE1 squalene monooxygenase SE1 squalene monooxygenase SE1 squalene monooxygenase SE1 squalene monooxygenase squalene epoxidase 3-like squalene epoxidase 3-like squalene monooxygenase-like squalene monooxygenase SE1 squalene epoxidase 3 squalene monooxygenase SE1 squalene monooxygenase SE1 squalene monooxygenase SE1 uncharacterized LOC100285558 uncharacterized LOC100274333 squalene monooxygenase SE1 squalene monooxygenase SE1 squalene monooxygenase SE1 squalene monooxygenase SE1-like squalene monooxygenase squalene monooxygenase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00100 Steroid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 2
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 4
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 2
bra00100 Steroid biosynthesis 2
bra00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00100 Steroid biosynthesis 4
bna00909 Sesquiterpenoid and triterpenoid biosynthesis 2
bna00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna00100 Steroid biosynthesis 2
bna00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
bna00100 Steroid biosynthesis 2
bna00909 Sesquiterpenoid and triterpenoid biosynthesis 2
bna00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 5
ghi00941 Flavonoid biosynthesis 5
ghi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 5
ghi00100 Steroid biosynthesis 2
ghi00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00100 Steroid biosynthesis 5
ghi00909 Sesquiterpenoid and triterpenoid biosynthesis 5
ghi00040 Pentose and glucuronate interconversions 4
ghi00330 Arginine and proline metabolism 4
ghi00410 beta-Alanine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00100 Steroid biosynthesis 2
gma00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma02010 ABC transporters 4
gma04981 Folate transport and metabolism 4
gma00062 Fatty acid elongation 2
gma04626 Plant-pathogen interaction 2
gma00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 5
vvi01230 Biosynthesis of amino acids 3
vvi00670 One carbon pool by folate 3
vvi00620 Pyruvate metabolism 2
vvi00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 5
ppo01200 Carbon metabolism 3
ppo00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00909 Sesquiterpenoid and triterpenoid biosynthesis 5
mtr00100 Steroid biosynthesis 3
mtr00999 Biosynthesis of various plant secondary metabolites 2
mtr00062 Fatty acid elongation 2
mtr01040 Biosynthesis of unsaturated fatty acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00100 Steroid biosynthesis 2
mtr00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00909 Sesquiterpenoid and triterpenoid biosynthesis 8
mtr00999 Biosynthesis of various plant secondary metabolites 5
mtr00100 Steroid biosynthesis 3
mtr00062 Fatty acid elongation 2
mtr01040 Biosynthesis of unsaturated fatty acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00100 Steroid biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00860 Porphyrin metabolism 3
sot00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00999 Biosynthesis of various plant secondary metabolites 11
sot00100 Steroid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00100 Steroid biosynthesis 2
nta00909 Sesquiterpenoid and triterpenoid biosynthesis 2
nta00230 Purine metabolism 2
nta00920 Sulfur metabolism 2
nta01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00100 Steroid biosynthesis 2
nta00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00100 Steroid biosynthesis 2
nta00909 Sesquiterpenoid and triterpenoid biosynthesis 2
nta00230 Purine metabolism 2
nta00920 Sulfur metabolism 2
nta01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00100 Steroid biosynthesis 2
zma00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00061 Fatty acid biosynthesis 3
zma01212 Fatty acid metabolism 3
zma01040 Biosynthesis of unsaturated fatty acids 2
zma00100 Steroid biosynthesis 2
zma00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00564 Glycerophospholipid metabolism 3
tae00565 Ether lipid metabolism 3
tae04144 Endocytosis 3
tae00100 Steroid biosynthesis 3
tae00909 Sesquiterpenoid and triterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 7
tae00100 Steroid biosynthesis 3
tae00909 Sesquiterpenoid and triterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00564 Glycerophospholipid metabolism 3
tae00565 Ether lipid metabolism 3
tae04144 Endocytosis 3
tae00100 Steroid biosynthesis 3
tae00909 Sesquiterpenoid and triterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 8
hvu00360 Phenylalanine metabolism 5
hvu00941 Flavonoid biosynthesis 3
hvu00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
hvu00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00480 Glutathione metabolism 4
sbi00053 Ascorbate and aldarate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00100 Steroid biosynthesis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842213 816814 829932 103864397 103857940 103838611 106432517 106392124 106446452 107935261 107938317 102610049 100810547 100804406 100796946 100265235 100254037 7497730 25496089 25482032 25496080 101250012 112940012 102585235 102579136 107771747 107761131 107828762 4332153 4332152 100285558 100274333 123085101 123092891 123098170 123449244 8056854 100839945 66057114
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