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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   VPS34   vacuolar protein sorting 34 
 ath-r.7   VPS34   vacuolar protein sorting 34 
 ath-m.9   VPS34   vacuolar protein sorting 34 
 ath-e.2   VPS34   vacuolar protein sorting 34 
 ath-m.4.bio   VPS34   vacuolar protein sorting 34 
 ath-m.4.hor   VPS34   vacuolar protein sorting 34 
 ath-m.4.lig   VPS34   vacuolar protein sorting 34 
 ath-m.4.str   VPS34   vacuolar protein sorting 34 
 ath-m.4.tis   VPS34   vacuolar protein sorting 34 
 bra-r.6   103838506   phosphatidylinositol 3-kinase VPS34 
 bna-r.1   106429126   phosphatidylinositol 3-kinase VPS34 
 bna-r.1   106381976   phosphatidylinositol 3-kinase VPS34 
 ghi-r.1   107922365   phosphatidylinositol 3-kinase, root isoform 
 ghi-r.1   107916519   phosphatidylinositol 3-kinase, root isoform 
 cit-r.1   102620738   phosphatidylinositol 3-kinase, nodule isoform 
 gma-u.5   547983   phosphatidylinositol 3-kinase 
 gma-u.5   100778348   phosphatidylinositol 3-kinase, nodule isoform-like 
 vvi-u.5   100263708   phosphatidylinositol 3-kinase, root isoform 
 ppo-u.5   7484773   phosphatidylinositol 3-kinase, root isoform 
 mtr-u.5   11415599   phosphatidylinositol 3-kinase, root isoform 
 sly-u.5   101250591   phosphatidylinositol 3-kinase, root isoform 
 sot-r.1   102588478   phosphatidylinositol 3-kinase, root isoform 
 nta-r.1   107788462   phosphatidylinositol 3-kinase, root isoform 
 nta-r.1   107795370   phosphatidylinositol 3-kinase, root isoform 
 osa-u.5   4337982   phosphatidylinositol 3-kinase, root isoform 
 osa-u.5   4345232   phosphatidylinositol 3-kinase, root isoform 
 zma-u.5   103653397   phosphatidylinositol 3-kinase, root isoform 
 tae-r.2   123119462   phosphatidylinositol 3-kinase, root isoform 
 tae-r.2   123110461   phosphatidylinositol 3-kinase, root isoform 
 tae-r.2   123102279   phosphatidylinositol 3-kinase, root isoform 
 hvu-r.1   123398821   phosphatidylinositol 3-kinase, root isoform 
 sbi-r.1   110436820   phosphatidylinositol 3-kinase, root isoform 
 bdi-r.1   100832757   phosphatidylinositol 3-kinase, root isoform 
 bdi-r.1   100824299   phosphatidylinositol 3-kinase, root isoform 
 cre-r.1   CHLRE_01g035500v5   uncharacterized protein 

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Top 50 coexpressed genes to VPS34 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to VPS34 (ath-u.5 coexpression data)

CoexMap"842344"


athVPS34 | Entrez gene ID : 842344      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 2 1 3 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00562 [list] [network] Inositol phosphate metabolism (81 genes)
ath04070 [list] [network] Phosphatidylinositol signaling system (77 genes)
ath04136 [list] [network] Autophagy - other (41 genes)
ath04145 [list] [network] Phagosome (87 genes)
GO BP
GO:2000214 [list] [network] regulation of L-proline metabolic process  (5 genes)  IMP  
GO:0006521 [list] [network] regulation of amino acid metabolic process  (17 genes)  IMP  
GO:1900426 [list] [network] positive regulation of defense response to bacterium  (30 genes)  IMP  
GO:0006897 [list] [network] endocytosis  (31 genes)  IDA IMP  
GO:0090333 [list] [network] regulation of stomatal closure  (43 genes)  IMP  
GO:1902074 [list] [network] response to salt  (50 genes)  IMP  
GO:0055046 [list] [network] microgametogenesis  (63 genes)  IMP  
GO:0072593 [list] [network] reactive oxygen species metabolic process  (74 genes)  IMP  
GO:0009751 [list] [network] response to salicylic acid  (179 genes)  IEP  
GO:0009651 [list] [network] response to salt stress  (473 genes)  IMP  
GO:0009617 [list] [network] response to bacterium  (500 genes)  IEP  
GO CC
GO:0005942 [list] [network] phosphatidylinositol 3-kinase complex  (4 genes)  IDA  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_176251.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_176251.1)
Subcellular
localization
TargetP
other 9  (predict for NP_176251.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
VPS34
ath-r.7
for
VPS34
ath-m.9
for
VPS34
ath-e.2
for
VPS34
ath-m.4.bio
for
VPS34
ath-m.4.hor
for
VPS34
ath-m.4.lig
for
VPS34
ath-m.4.str
for
VPS34
ath-m.4.tis
for
VPS34
bra-r.6
for
103838506
bna-r.1
for
106429126
bna-r.1
for
106381976
ghi-r.1
for
107922365
ghi-r.1
for
107916519
cit-r.1
for
102620738
gma-u.5
for
547983
gma-u.5
for
100778348
vvi-u.5
for
100263708
ppo-u.5
for
7484773
mtr-u.5
for
11415599
sly-u.5
for
101250591
sot-r.1
for
102588478
nta-r.1
for
107788462
nta-r.1
for
107795370
osa-u.5
for
4337982
osa-u.5
for
4345232
zma-u.5
for
103653397
tae-r.2
for
123119462
tae-r.2
for
123110461
tae-r.2
for
123102279
hvu-r.1
for
123398821
sbi-r.1
for
110436820
bdi-r.1
for
100832757
bdi-r.1
for
100824299
cre-r.1
for
CHLRE_01g035500v5


Ortholog ID: 9268
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa osa zma tae tae tae hvu sbi bdi bdi cre
Symbol VPS34 LOC103838506 LOC106429126 LOC106381976 LOC107922365 LOC107916519 LOC102620738 LOC547983 LOC100778348 LOC100263708 LOC7484773 LOC11415599 LOC101250591 LOC102588478 LOC107788462 LOC107795370 LOC4337982 LOC4345232 LOC103653397 LOC123119462 LOC123110461 LOC123102279 LOC123398821 LOC110436820 LOC100832757 LOC100824299 CHLRE_01g035500v5
Function* vacuolar protein sorting 34 phosphatidylinositol 3-kinase VPS34 phosphatidylinositol 3-kinase VPS34 phosphatidylinositol 3-kinase VPS34 phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, nodule isoform phosphatidylinositol 3-kinase phosphatidylinositol 3-kinase, nodule isoform-like phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform phosphatidylinositol 3-kinase, root isoform uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 3
ath04141 Protein processing in endoplasmic reticulum 2
ath04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 9
bna03420 Nucleotide excision repair 6
bna04141 Protein processing in endoplasmic reticulum 3
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 6
bna03420 Nucleotide excision repair 5
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
bna04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 8
ghi00510 N-Glycan biosynthesis 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 4
ghi03460 Fanconi anemia pathway 4
ghi00510 N-Glycan biosynthesis 2
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00562 Inositol phosphate metabolism 2
cit03420 Nucleotide excision repair 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04136 Autophagy - other 4
gma03018 RNA degradation 2
gma03015 mRNA surveillance pathway 2
gma00562 Inositol phosphate metabolism 2
gma04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
gma04136 Autophagy - other 3
gma00562 Inositol phosphate metabolism 2
gma04070 Phosphatidylinositol signaling system 2
gma04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
ppo04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00562 Inositol phosphate metabolism 2
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04136 Autophagy - other 4
sly00562 Inositol phosphate metabolism 2
sly04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
sot04146 Peroxisome 2
sot04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00071 Fatty acid degradation 3
nta00592 alpha-Linolenic acid metabolism 3
nta01212 Fatty acid metabolism 3
nta00440 Phosphonate and phosphinate metabolism 2
nta00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 6
nta00071 Fatty acid degradation 3
nta00592 alpha-Linolenic acid metabolism 3
nta01212 Fatty acid metabolism 3
nta00440 Phosphonate and phosphinate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04136 Autophagy - other 6
osa00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 10
tae00562 Inositol phosphate metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 9
tae00562 Inositol phosphate metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 10
tae00562 Inositol phosphate metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04136 Autophagy - other 3
hvu04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 4
sbi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 8
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 4
bdi00190 Oxidative phosphorylation 2
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04136 Autophagy - other 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842344 103838506 106429126 106381976 107922365 107916519 102620738 547983 100778348 100263708 7484773 11415599 101250591 102588478 107788462 107795370 4337982 4345232 103653397 123119462 123110461 123102279 123398821 110436820 100832757 100824299 5715461
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